Analysis of interatomic Contacts of Structural Units in PDB entry:
5JD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JD6 entry

There is 1 chain in PDB entry 5JD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3PHE 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5JD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 34Right-handed 310
Helix 2
AA2
A
35 42Right-handed alpha
Helix 3
AA3
A
43 45Right-handed 310
Helix 4
AA4
A
65 81Right-handed alpha
Helix 5
AA5
A
92 104Right-handed alpha
Helix 6
AA6
A
153 158Right-handed 310
Helix 7
AA7
A
159 165Right-handed alpha
Helix 8
AA8
A
168 182Right-handed alpha
Helix 9
AA9
A
187 191Right-handed 310
Helix 10
AB1
A
207 218Right-handed alpha
Helix 11
AB2
A
232 237Right-handed alpha
Helix 12
AB3
A
237 253Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5JD6.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
11 16anti-parallel
Strand 3
A
47 52anti-parallel
Strand 4
A
20 25parallel
Strand 5
A
85 91parallel
Strand 6
A
108 116parallel
Strand 7
A
195 200parallel
Strand 8
A
221 226parallel
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