Analysis of interatomic Contacts of Structural Units in PDB entry:
5JD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JD8 entry

There is 1 chain in PDB entry 5JD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 43ASP 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5JD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 56Right-handed alpha
Helix 2
AA2
A
95 99Right-handed alpha
Helix 3
AA3
A
159 163Right-handed 310
Helix 4
AA4
A
237 251Right-handed alpha
Helix 5
AA5
A
292 296Right-handed 310
Helix 6
AA6
A
313 324Right-handed alpha
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There are 4 sheets in PDB entry 5JD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 65first strand
Strand 2
A
76 84anti-parallel
Strand 3
A
90 94anti-parallel
Strand 4
A
127 131anti-parallel
Strand 5
A
113 122anti-parallel
Strand 6
A
103 107anti-parallel
Strand 7
A
59 65anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
166 175anti-parallel
Strand 3
A
189 191anti-parallel
Strand 4
A
232 236anti-parallel
Strand 5
A
211 218anti-parallel
Strand 6
A
203 206anti-parallel
Strand 7
A
153 158anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
A
340 349anti-parallel
Strand 3
A
328 335anti-parallel
Strand 4
A
302 306anti-parallel
Strand 5
A
281 286anti-parallel
Strand 6
A
260 263anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
A
340 349anti-parallel
Strand 3
A
328 335anti-parallel
Strand 4
A
302 306anti-parallel
Strand 5
A
309 310anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il