Analysis of interatomic Contacts of Structural Units in PDB entry:
5JDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JDA entry

There is 1 chain in PDB entry 5JDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0ASP 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5JDA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 20Right-handed alpha
Helix 2
AA2
A
47 52Right-handed 310
Helix 3
AA3
A
85 97Right-handed alpha
Helix 4
AA4
A
126 133Right-handed alpha
Helix 5
AA5
A
176 191Right-handed alpha
Helix 6
AA6
A
192 200Right-handed alpha
Helix 7
AA7
A
201 203Right-handed 310
Helix 8
AA8
A
205 220Right-handed alpha
Helix 9
AA9
A
271 278Right-handed alpha
Helix 10
AB1
A
280 297Right-handed alpha
Helix 11
AB2
A
300 320Right-handed alpha
Helix 12
AB3
A
328 354Right-handed alpha
Helix 13
AB4
A
355 358Right-handed 310
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There are 3 sheets in PDB entry 5JDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
27 33anti-parallel
Strand 3
A
36 44anti-parallel
Strand 4
A
57 63anti-parallel
Strand 5
A
72 76anti-parallel
Strand 6
A
114 123anti-parallel
Strand 7
A
104 111anti-parallel
Strand 8
A
4 8parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 172first strand
Strand 2
A
138 143anti-parallel
Strand 3
A
229 234anti-parallel
Strand 4
A
239 244anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
159 160anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il