Analysis of interatomic Contacts of Structural Units in PDB entry:
5JDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JDE entry

There are 2 chains in PDB entry 5JDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4VAL 263
B
 ILE 6GLU 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5JDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 70Right-handed 310
Helix 2
AA2
A
153 157Right-handed 310
Helix 3
AA3
A
240 244Right-handed 310
Helix 4
AA4
B
66 70Right-handed 310
Helix 5
AA5
B
153 157Right-handed 310
Helix 6
AA6
B
240 244Right-handed 310
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There are 12 sheets in PDB entry 5JDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
21 27anti-parallel
Strand 3
A
57 62anti-parallel
Strand 4
A
49 54anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 16first strand
Strand 2
A
80 89parallel
Strand 3
A
71 77anti-parallel
Strand 4
A
35 38anti-parallel
Strand 5
A
41 42anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
108 114anti-parallel
Strand 3
A
144 149anti-parallel
Strand 4
A
136 141anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
167 176parallel
Strand 3
A
158 164anti-parallel
Strand 4
A
123 125anti-parallel
Strand 5
A
128 129anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
195 201anti-parallel
Strand 3
A
231 236anti-parallel
Strand 4
A
223 227anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
254 263parallel
Strand 3
A
245 251anti-parallel
Strand 4
A
209 212anti-parallel
Strand 5
A
215 216anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 16first strand
Strand 2
B
80 89parallel
Strand 3
B
71 77anti-parallel
Strand 4
B
34 38anti-parallel
Strand 5
B
41 42anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 26first strand
Strand 2
B
57 62anti-parallel
Strand 3
B
49 54anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
108 114anti-parallel
Strand 3
B
144 149anti-parallel
Strand 4
B
136 141anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 103first strand
Strand 2
B
167 176parallel
Strand 3
B
158 164anti-parallel
Strand 4
B
123 125anti-parallel
Strand 5
B
128 129anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
195 201anti-parallel
Strand 3
B
231 236anti-parallel
Strand 4
B
223 228anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 190first strand
Strand 2
B
254 263parallel
Strand 3
B
245 251anti-parallel
Strand 4
B
209 212anti-parallel
Strand 5
B
215 216anti-parallel
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