Analysis of interatomic Contacts of Structural Units in PDB entry:
5JDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JDJ entry

There are 16 chains in PDB entry 5JDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1THR 91
B
 GLY 1THR 91
C
 GLY 1THR 91
D
 ALA 2THR 91
E
 MET 3THR 91
F
 ALA 2THR 91
G
 ALA 2THR 91
H
 GLY 1THR 91
I
 GLY 1THR 91
J
 GLU 4THR 91
K
 MET 3THR 91
L
 ALA 2THR 91
M
 GLU 4THR 91
N
 GLU 4THR 89
O
 LEU 6THR 91
P
 THR 5THR 91
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5JDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 5Right-handed 310
Helix 2
AA2
A
68 72Right-handed 310
Helix 3
AA3
B
1 5Right-handed 310
Helix 4
AA4
B
68 72Right-handed 310
Helix 5
AA5
C
1 5Right-handed 310
Helix 6
AA6
C
68 72Right-handed 310
Helix 7
AA7
D
68 72Right-handed 310
Helix 8
AA8
E
68 72Right-handed 310
Helix 9
AA9
F
68 72Right-handed 310
Helix 10
AB1
G
68 72Right-handed 310
Helix 11
AB2
H
68 72Right-handed 310
Helix 12
AB3
I
68 72Right-handed 310
Helix 13
AB4
J
68 72Right-handed 310
Helix 14
AB5
K
68 72Right-handed 310
Helix 15
AB6
L
68 72Right-handed 310
Helix 16
AB7
M
68 72Right-handed 310
Helix 17
AB8
N
68 72Right-handed 310
Helix 18
AB9
O
68 72Right-handed 310
Helix 19
AC1
P
68 72Right-handed 310
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There are 24 sheets in PDB entry 5JDJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
23 29anti-parallel
Strand 3
A
59 64anti-parallel
Strand 4
A
51 56anti-parallel
Strand 5
L
51 56anti-parallel
Strand 6
L
59 64anti-parallel
Strand 7
L
23 28anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
82 90parallel
Strand 3
A
73 79anti-parallel
Strand 4
A
38 40anti-parallel
Strand 5
A
43 44anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
23 29anti-parallel
Strand 3
B
59 64anti-parallel
Strand 4
B
51 56anti-parallel
Strand 5
P
51 56anti-parallel
Strand 6
P
59 64anti-parallel
Strand 7
P
23 29anti-parallel
Strand 8
P
8 10anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
83 90parallel
Strand 3
B
73 78anti-parallel
Strand 4
B
38 40anti-parallel
Strand 5
B
43 44anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 10first strand
Strand 2
C
23 29anti-parallel
Strand 3
C
59 64anti-parallel
Strand 4
C
51 56anti-parallel
Strand 5
M
51 56anti-parallel
Strand 6
M
59 64anti-parallel
Strand 7
M
23 29anti-parallel
Strand 8
M
8 10anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 17first strand
Strand 2
C
82 90parallel
Strand 3
C
73 79anti-parallel
Strand 4
C
37 40anti-parallel
Strand 5
C
43 44anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 18first strand
Strand 2
D
83 91parallel
Strand 3
D
73 78anti-parallel
Strand 4
D
38 40anti-parallel
Strand 5
D
43 44anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 28first strand
Strand 2
D
59 64anti-parallel
Strand 3
D
51 56anti-parallel
Strand 4
E
51 56anti-parallel
Strand 5
E
59 64anti-parallel
Strand 6
E
23 28anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
15 17first strand
Strand 2
E
82 90parallel
Strand 3
E
73 79anti-parallel
Strand 4
E
38 40anti-parallel
Strand 5
E
43 44anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
8 10first strand
Strand 2
F
23 29anti-parallel
Strand 3
F
59 64anti-parallel
Strand 4
F
51 56anti-parallel
Strand 5
N
51 56anti-parallel
Strand 6
N
59 64anti-parallel
Strand 7
N
23 29anti-parallel
Strand 8
N
8 10anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
15 18first strand
Strand 2
F
82 91parallel
Strand 3
F
73 79anti-parallel
Strand 4
F
37 40anti-parallel
Strand 5
F
43 44anti-parallel
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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
8 10first strand
Strand 2
G
23 29anti-parallel
Strand 3
G
59 64anti-parallel
Strand 4
G
51 56anti-parallel
Strand 5
J
51 56anti-parallel
Strand 6
J
59 64anti-parallel
Strand 7
J
23 29anti-parallel
Strand 8
J
8 10anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
15 18first strand
Strand 2
G
82 91parallel
Strand 3
G
73 79anti-parallel
Strand 4
G
38 40anti-parallel
Strand 5
G
43 44anti-parallel
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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
8 10first strand
Strand 2
H
23 29anti-parallel
Strand 3
H
59 64anti-parallel
Strand 4
H
51 56anti-parallel
Strand 5
I
51 56anti-parallel
Strand 6
I
59 64anti-parallel
Strand 7
I
23 28anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
15 18first strand
Strand 2
H
82 91parallel
Strand 3
H
73 79anti-parallel
Strand 4
H
38 40anti-parallel
Strand 5
H
43 44anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
15 18first strand
Strand 2
I
82 91parallel
Strand 3
I
73 79anti-parallel
Strand 4
I
38 40anti-parallel
Strand 5
I
43 44anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
15 18first strand
Strand 2
J
82 91parallel
Strand 3
J
73 79anti-parallel
Strand 4
J
37 40anti-parallel
Strand 5
J
43 44anti-parallel
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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
8 10first strand
Strand 2
K
23 29anti-parallel
Strand 3
K
59 64anti-parallel
Strand 4
K
51 56anti-parallel
Strand 5
O
51 56anti-parallel
Strand 6
O
59 64anti-parallel
Strand 7
O
23 29anti-parallel
Strand 8
O
8 10anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
15 18first strand
Strand 2
K
82 91parallel
Strand 3
K
73 79anti-parallel
Strand 4
K
37 40anti-parallel
Strand 5
K
43 44anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
15 18first strand
Strand 2
L
82 91parallel
Strand 3
L
73 79anti-parallel
Strand 4
L
38 40anti-parallel
Strand 5
L
43 44anti-parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
15 17first strand
Strand 2
M
82 90parallel
Strand 3
M
73 79anti-parallel
Strand 4
M
36 40anti-parallel
Strand 5
M
43 44anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
43 44first strand
Strand 2
N
38 40anti-parallel
Strand 3
N
73 79anti-parallel
Strand 4
N
82 88anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
15 18first strand
Strand 2
O
82 91parallel
Strand 3
O
73 79anti-parallel
Strand 4
O
38 40anti-parallel
Strand 5
O
43 44anti-parallel
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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
15 17first strand
Strand 2
P
82 90parallel
Strand 3
P
73 79anti-parallel
Strand 4
P
38 40anti-parallel
Strand 5
P
43 44anti-parallel
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