Analysis of interatomic Contacts of Structural Units in PDB entry:
5JDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JDO entry

There are 6 chains in PDB entry 5JDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3SER 251
B
 GLY 3VAL 247
C
 VAL 2ARG 142
D
 HIS 3HIS 147
E
 VAL 2TYR 141
F
 HIS 3TYR 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5JDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 27Right-handed alpha
Helix 2
AA2
A
27 45Right-handed alpha
Helix 3
AA3
A
45 74Right-handed alpha
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
88 148Right-handed alpha
Helix 6
AA6
A
152 162Right-handed alpha
Helix 7
AA7
A
171 181Right-handed alpha
Helix 8
AA8
A
182 187Right-handed alpha
Helix 9
AA9
A
191 241Right-handed alpha
Helix 10
AB1
A
242 247Right-handed alpha
Helix 11
AB2
B
11 27Right-handed alpha
Helix 12
AB3
B
27 45Right-handed alpha
Helix 13
AB4
B
45 74Right-handed alpha
Helix 14
AB5
B
81 148Right-handed alpha
Helix 15
AB6
B
152 162Right-handed alpha
Helix 16
AB7
B
171 181Right-handed alpha
Helix 17
AB8
B
182 187Right-handed alpha
Helix 18
AB9
B
191 246Right-handed alpha
Helix 19
AC1
C
4 19Right-handed alpha
Helix 20
AC2
C
21 37Right-handed alpha
Helix 21
AC3
C
38 44Right-handed 310
Helix 22
AC4
C
53 73Right-handed alpha
Helix 23
AC5
C
76 81Right-handed alpha
Helix 24
AC6
C
81 91Right-handed alpha
Helix 25
AC7
C
96 114Right-handed alpha
Helix 26
AC8
C
119 139Right-handed alpha
Helix 27
AC9
D
5 17Right-handed alpha
Helix 28
AD1
D
20 36Right-handed alpha
Helix 29
AD2
D
37 47Right-handed 310
Helix 30
AD3
D
51 58Right-handed alpha
Helix 31
AD4
D
58 76Right-handed alpha
Helix 32
AD5
D
81 86Right-handed alpha
Helix 33
AD6
D
86 94Right-handed alpha
Helix 34
AD7
D
100 120Right-handed alpha
Helix 35
AD8
D
121 123Right-handed 310
Helix 36
AD9
D
124 143Right-handed alpha
Helix 37
AE1
E
4 19Right-handed alpha
Helix 38
AE2
E
21 37Right-handed alpha
Helix 39
AE3
E
38 44Right-handed 310
Helix 40
AE4
E
53 73Right-handed alpha
Helix 41
AE5
E
76 81Right-handed alpha
Helix 42
AE6
E
81 91Right-handed alpha
Helix 43
AE7
E
96 114Right-handed alpha
Helix 44
AE8
E
119 139Right-handed alpha
Helix 45
AE9
F
5 17Right-handed alpha
Helix 46
AF1
F
20 36Right-handed alpha
Helix 47
AF2
F
37 47Right-handed 310
Helix 48
AF3
F
51 58Right-handed alpha
Helix 49
AF4
F
58 76Right-handed alpha
Helix 50
AF5
F
81 86Right-handed alpha
Helix 51
AF6
F
86 95Right-handed alpha
Helix 52
AF7
F
100 120Right-handed alpha
Helix 53
AF8
F
121 123Right-handed 310
Helix 54
AF9
F
124 143Right-handed alpha
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There are no sheets in PDB entry 5JDO
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il