Analysis of interatomic Contacts of Structural Units in PDB entry:
5JDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JDY entry

There are 2 chains in PDB entry 5JDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5PRO 245
B
 ALA 5PRO 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5JDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 11Right-handed 310
Helix 2
AA2
A
12 21Right-handed alpha
Helix 3
AA3
A
22 36Right-handed alpha
Helix 4
AA4
A
51 60Right-handed alpha
Helix 5
AA5
A
71 85Right-handed alpha
Helix 6
AA6
A
95 99Right-handed 310
Helix 7
AA7
A
113 117Right-handed 310
Helix 8
AA8
A
119 133Right-handed alpha
Helix 9
AA9
A
150 154Right-handed 310
Helix 10
AB1
A
156 159Right-handed 310
Helix 11
AB2
A
193 204Right-handed alpha
Helix 12
AB3
A
217 223Right-handed alpha
Helix 13
AB4
A
229 235Right-handed alpha
Helix 14
AB5
B
5 11Right-handed 310
Helix 15
AB6
B
12 21Right-handed alpha
Helix 16
AB7
B
22 36Right-handed alpha
Helix 17
AB8
B
51 60Right-handed alpha
Helix 18
AB9
B
71 86Right-handed alpha
Helix 19
AC1
B
113 117Right-handed 310
Helix 20
AC2
B
119 132Right-handed alpha
Helix 21
AC3
B
150 154Right-handed 310
Helix 22
AC4
B
156 159Right-handed 310
Helix 23
AC5
B
193 204Right-handed alpha
Helix 24
AC6
B
217 223Right-handed alpha
Helix 25
AC7
B
229 235Right-handed alpha
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There are 6 sheets in PDB entry 5JDY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
64 69parallel
Strand 3
A
42 46parallel
Strand 4
A
105 111parallel
Strand 5
A
134 145parallel
Strand 6
A
238 244anti-parallel
Strand 7
A
208 212anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
172 179anti-parallel
Strand 3
A
167 169anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
172 179anti-parallel
Strand 3
A
185 191anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 93first strand
Strand 2
B
64 69parallel
Strand 3
B
42 46parallel
Strand 4
B
105 111parallel
Strand 5
B
134 145parallel
Strand 6
B
238 244anti-parallel
Strand 7
B
208 212anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 163first strand
Strand 2
B
172 179anti-parallel
Strand 3
B
167 169anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 163first strand
Strand 2
B
172 179anti-parallel
Strand 3
B
185 191anti-parallel
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