Analysis of interatomic Contacts of Structural Units in PDB entry:
5JEA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JEA entry

There are 5 chains in PDB entry 5JEA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	GLU 300
B	ARG 3	ALA 245
C	PRO 14	ASN 393
D	SER 0	VAL 223
E	HIS 0	SER 228

There are 98 helices in PDB entry 5JEA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	21	Right-handed alpha
Helix 2	AA2	A	98	113	Right-handed alpha
Helix 3	AA3	A	146	162	Right-handed alpha
Helix 4	AA4	A	205	212	Right-handed alpha
Helix 5	AA5	A	224	229	Right-handed alpha
Helix 6	AA6	A	258	299	Right-handed alpha
Helix 7	AA7	B	94	109	Right-handed alpha
Helix 8	AA8	B	113	117	Right-handed 310
Helix 9	AA9	B	134	150	Right-handed alpha
Helix 10	AB1	B	175	180	Right-handed alpha
Helix 11	AB2	B	209	242	Right-handed alpha
Helix 12	AB3	C	18	26	Right-handed alpha
Helix 13	AB4	C	26	36	Right-handed alpha
Helix 14	AB5	C	123	127	Right-handed 310
Helix 15	AB6	C	145	162	Right-handed alpha
Helix 16	AB7	C	166	171	Right-handed 310
Helix 17	AB8	C	226	240	Right-handed alpha
Helix 18	AB9	C	287	291	Right-handed 310
Helix 19	AC1	C	303	307	Right-handed 310
Helix 20	AC2	C	337	343	Right-handed alpha
Helix 21	AC3	C	370	391	Right-handed alpha
Helix 22	AC4	D	60	78	Right-handed alpha
Helix 23	AC5	D	79	83	Right-handed 310
Helix 24	AC6	D	105	124	Right-handed alpha
Helix 25	AC7	D	150	156	Right-handed alpha
Helix 26	AC8	D	187	218	Right-handed alpha
Helix 27	AC9	D	219	221	Right-handed 310
Helix 28	AD1	E	4	17	Right-handed alpha
Helix 29	AD2	E	89	103	Right-handed alpha
Helix 30	AD3	E	110	115	Right-handed 310
Helix 31	AD4	E	137	150	Right-handed alpha
Helix 32	AD5	E	202	209	Right-handed alpha
Helix 33	AD6	E	240	254	Right-handed alpha
Helix 34	AD7	E	255	263	Right-handed alpha
Helix 35	AD8	F	106	125	Right-handed alpha
Helix 36	AD9	F	126	130	Right-handed 310
Helix 37	AE1	F	164	183	Right-handed alpha
Helix 38	AE2	F	205	208	Right-handed 310
Helix 39	AE3	F	222	248	Right-handed alpha
Helix 40	AE4	G	159	169	Right-handed alpha
Helix 41	AE5	G	173	180	Right-handed alpha
Helix 42	AE6	G	200	217	Right-handed alpha
Helix 43	AE7	G	222	232	Right-handed alpha
Helix 44	AE8	H	139	141	Right-handed 310
Helix 45	AE9	H	153	158	Right-handed alpha
Helix 46	AF1	H	158	163	Right-handed alpha
Helix 47	AF2	H	203	207	Right-handed 310
Helix 48	AF3	H	237	242	Right-handed alpha
Helix 49	AF4	H	270	277	Right-handed alpha
Helix 50	AF5	H	290	310	Right-handed alpha
Helix 51	AF6	H	315	327	Right-handed alpha
Helix 52	AF7	H	331	336	Right-handed 310
Helix 53	AF8	H	337	355	Right-handed alpha
Helix 54	AF9	I	182	187	Right-handed alpha
Helix 55	AG1	I	208	210	Right-handed 310
Helix 56	AG2	I	214	218	Right-handed 310
Helix 57	AG3	I	219	223	Right-handed 310
Helix 58	AG4	J	54	59	Right-handed alpha
Helix 59	AG5	J	91	103	Right-handed alpha
Helix 60	AG6	J	115	125	Right-handed alpha
Helix 61	AG7	J	125	138	Right-handed alpha
Helix 62	AG8	J	165	186	Right-handed alpha
Helix 63	AG9	J	217	224	Right-handed alpha
Helix 64	AH1	J	227	232	Right-handed alpha
Helix 65	AH2	J	260	270	Right-handed alpha
Helix 66	AH3	J	303	308	Right-handed alpha
Helix 67	AH4	J	322	326	Right-handed 310
Helix 68	AH5	J	366	384	Right-handed alpha
Helix 69	AH6	J	409	412	Right-handed 310
Helix 70	AH7	J	476	488	Right-handed alpha
Helix 71	AH8	J	496	501	Right-handed alpha
Helix 72	AH9	J	506	510	Right-handed 310
Helix 73	AI1	J	518	525	Right-handed alpha
Helix 74	AI2	J	526	530	Right-handed 310
Helix 75	AI3	J	581	590	Right-handed alpha
Helix 76	AI4	J	605	610	Right-handed alpha
Helix 77	AI5	J	654	663	Right-handed alpha
Helix 78	AI6	J	668	692	Right-handed alpha
Helix 79	AI7	J	721	746	Right-handed alpha
Helix 80	AI8	J	759	774	Right-handed alpha
Helix 81	AI9	J	782	793	Right-handed alpha
Helix 82	AJ1	J	800	813	Right-handed alpha
Helix 83	AJ2	J	822	824	Right-handed 310
Helix 84	AJ3	J	825	829	Right-handed 310
Helix 85	AJ4	J	848	862	Right-handed alpha
Helix 86	AJ5	J	868	872	Right-handed 310
Helix 87	AJ6	J	873	910	Right-handed alpha
Helix 88	AJ7	J	941	945	Right-handed alpha
Helix 89	AJ8	K	120	132	Right-handed alpha
Helix 90	AJ9	K	149	156	Right-handed alpha
Helix 91	AK1	K	196	209	Right-handed alpha
Helix 92	AK2	K	211	236	Right-handed alpha
Helix 93	AK3	K	285	287	Right-handed 310
Helix 94	AK4	K	288	306	Right-handed alpha
Helix 95	AK5	K	309	316	Right-handed alpha
Helix 96	AK6	K	317	328	Right-handed alpha
Helix 97	AK7	K	370	381	Right-handed alpha
Helix 98	AK8	K	383	388	Right-handed alpha

There are 38 sheets in PDB entry 5JEA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	46	51	anti-parallel
Strand 3	A	54	65	anti-parallel
Strand 4	A	130	142	anti-parallel
Strand 5	A	76	80	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	46	51	anti-parallel
Strand 3	A	54	65	anti-parallel
Strand 4	A	130	142	anti-parallel
Strand 5	A	124	126	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	185	186	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	170	first strand
Strand 2	A	173	176	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	233	239	anti-parallel
Strand 4	A	244	257	anti-parallel
Strand 5	B	195	201	anti-parallel
Strand 6	B	183	190	anti-parallel
Strand 7	B	158	166	anti-parallel
Strand 8	B	169	172	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	233	239	anti-parallel
Strand 4	A	244	257	anti-parallel
Strand 5	B	205	206	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	38	44	anti-parallel
Strand 3	B	47	57	anti-parallel
Strand 4	B	121	130	anti-parallel
Strand 5	B	71	78	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	56	first strand
Strand 2	C	76	82	anti-parallel
Strand 3	C	85	97	anti-parallel
Strand 4	C	209	220	anti-parallel
Strand 5	C	131	136	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	56	first strand
Strand 2	C	76	82	anti-parallel
Strand 3	C	85	97	anti-parallel
Strand 4	F	16	17	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	188	first strand
Strand 2	C	175	180	anti-parallel
Strand 3	C	242	248	parallel
Strand 4	C	275	283	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	332	first strand
Strand 2	C	293	302	anti-parallel
Strand 3	C	345	351	anti-parallel
Strand 4	C	357	364	anti-parallel
Strand 5	D	173	186	anti-parallel
Strand 6	D	157	168	anti-parallel
Strand 7	D	130	139	anti-parallel
Strand 8	D	145	147	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	15	21	anti-parallel
Strand 3	D	24	34	anti-parallel
Strand 4	D	87	96	anti-parallel
Strand 5	D	47	53	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	38	first strand
Strand 2	E	46	52	anti-parallel
Strand 3	E	57	68	anti-parallel
Strand 4	E	120	132	anti-parallel
Strand 5	E	76	82	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	158	first strand
Strand 2	E	171	179	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	199	first strand
Strand 2	E	186	193	anti-parallel
Strand 3	E	211	217	anti-parallel
Strand 4	E	226	228	anti-parallel
Strand 5	F	209	215	anti-parallel
Strand 6	F	199	204	anti-parallel
Strand 7	F	192	196	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	50	first strand
Strand 2	F	58	66	anti-parallel
Strand 3	F	69	81	anti-parallel
Strand 4	F	133	146	anti-parallel
Strand 5	F	91	99	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	5	first strand
Strand 2	G	40	44	anti-parallel
Strand 3	G	53	58	anti-parallel
Strand 4	G	19	21	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	27	first strand
Strand 2	G	34	36	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	150	first strand
Strand 2	G	118	125	anti-parallel
Strand 3	G	133	135	anti-parallel
Strand 4	G	95	98	parallel
Strand 5	G	83	87	anti-parallel
Strand 6	G	71	79	anti-parallel
Strand 7	G	118	125	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	157	first strand
Strand 2	G	193	197	anti-parallel
Strand 3	G	185	189	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	55	first strand
Strand 2	H	86	91	anti-parallel
Strand 3	H	94	99	anti-parallel
Strand 4	H	68	69	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	62	first strand
Strand 2	H	79	82	anti-parallel
Strand 3	H	73	76	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	192	193	first strand
Strand 2	H	168	176	anti-parallel
Strand 3	H	182	185	anti-parallel
Strand 4	H	134	137	parallel
Strand 5	H	123	127	anti-parallel
Strand 6	H	111	119	anti-parallel
Strand 7	H	168	176	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	197	201	first strand
Strand 2	H	230	235	anti-parallel
Strand 3	H	221	225	anti-parallel
Strand 4	H	214	217	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	11	first strand
Strand 2	I	62	67	anti-parallel
Strand 3	I	106	111	anti-parallel
Strand 4	I	32	37	parallel
Strand 5	I	21	23	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	15	19	first strand
Strand 2	I	51	58	anti-parallel
Strand 3	I	41	48	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	253	256	first strand
Strand 2	I	229	236	anti-parallel
Strand 3	I	242	246	anti-parallel
Strand 4	I	202	206	parallel
Strand 5	I	150	158	anti-parallel
Strand 6	I	138	146	anti-parallel
Strand 7	I	229	236	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	268	271	first strand
Strand 2	I	274	276	anti-parallel
Strand 3	I	283	284	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	18	26	anti-parallel
Strand 3	J	33	41	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	144	148	first strand
Strand 2	J	110	114	parallel
Strand 3	J	86	90	parallel
Strand 4	J	191	195	parallel
Strand 5	J	214	216	parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	299	302	first strand
Strand 2	J	287	290	anti-parallel
Strand 3	J	274	280	anti-parallel
Strand 4	J	315	320	anti-parallel
Strand 5	J	390	397	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	403	407	first strand
Strand 2	J	420	426	anti-parallel
Strand 3	J	434	438	anti-parallel
Strand 4	J	464	473	parallel
Strand 5	J	447	455	anti-parallel
Strand 6	J	403	407	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	532	533	first strand
Strand 2	J	636	653	parallel
Strand 3	J	620	630	anti-parallel
Strand 4	J	564	571	anti-parallel
Strand 5	J	552	558	anti-parallel
Strand 6	J	539	543	anti-parallel
Strand 7	J	636	653	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	594	595	first strand
Strand 2	J	600	601	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	701	702	first strand
Strand 2	J	716	717	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	751	754	first strand
Strand 2	J	817	820	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	935	940	first strand
Strand 2	J	925	930	anti-parallel
Strand 3	J	913	921	anti-parallel
Strand 4	J	978	983	anti-parallel
Strand 5	J	998	1000	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	952	954	first strand
Strand 2	J	959	962	anti-parallel
Strand 3	J	971	974	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JEA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JEA