Analysis of interatomic Contacts of Structural Units in PDB entry:
5JEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JEF entry

There are 2 chains in PDB entry 5JEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3LEU 225
B
 VAL 3TYR 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 5JEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 35Right-handed alpha
Helix 2
AA2
A
38 63Right-handed alpha
Helix 3
AA3
A
66 79Right-handed alpha
Helix 4
AA4
A
80 85Right-handed alpha
Helix 5
AA5
A
92 115Right-handed alpha
Helix 6
AA6
A
117 176Right-handed alpha
Helix 7
AA7
A
176 191Right-handed alpha
Helix 8
AA8
A
206 225Right-handed alpha
Helix 9
AA9
B
6 37Right-handed alpha
Helix 10
AB1
B
38 63Right-handed alpha
Helix 11
AB2
B
66 79Right-handed alpha
Helix 12
AB3
B
80 85Right-handed alpha
Helix 13
AB4
B
92 115Right-handed alpha
Helix 14
AB5
B
117 176Right-handed alpha
Helix 15
AB6
B
176 191Right-handed alpha
Helix 16
AB7
B
206 226Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5JEF
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il