Analysis of interatomic Contacts of Structural Units in PDB entry:
5JEK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JEK entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 5JEK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 189GLN 422
B
 GLU 189GLN 422
C
 SER 433ILE 441
C
 ALA 443SER 446
D
 CYS 435ILE 441
D
 ALA 443GLY 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5JEK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
190 197Right-handed 310
Helix 2
AA2
A
247 251Right-handed 310
Helix 3
AA3
A
254 267Right-handed alpha
Helix 4
AA4
A
322 334Right-handed alpha
Helix 5
AA5
A
357 361Right-handed 310
Helix 6
AA6
A
370 383Right-handed alpha
Helix 7
AA7
A
405 418Right-handed alpha
Helix 8
AA8
B
190 196Right-handed 310
Helix 9
AA9
B
254 266Right-handed alpha
Helix 10
AB1
B
322 334Right-handed alpha
Helix 11
AB2
B
357 361Right-handed 310
Helix 12
AB3
B
370 381Right-handed alpha
Helix 13
AB4
B
382 384Right-handed 310
Helix 14
AB5
B
404 417Right-handed alpha
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There are 6 sheets in PDB entry 5JEK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 220first strand
Strand 2
A
204 210anti-parallel
Strand 3
A
363 369anti-parallel
Strand 4
A
343 348anti-parallel
Strand 5
A
291 296anti-parallel
Strand 6
A
309 310anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 244first strand
Strand 2
A
226 229parallel
Strand 3
A
272 277anti-parallel
Strand 4
A
280 285anti-parallel
Strand 5
A
318 321anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 391first strand
Strand 2
A
401 404anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 221first strand
Strand 2
B
203 210anti-parallel
Strand 3
B
363 369anti-parallel
Strand 4
B
343 348anti-parallel
Strand 5
B
291 296anti-parallel
Strand 6
B
309 310anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 244first strand
Strand 2
B
226 229parallel
Strand 3
B
272 277anti-parallel
Strand 4
B
280 285anti-parallel
Strand 5
B
317 321anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
389 391first strand
Strand 2
B
401 403anti-parallel
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