Analysis of interatomic Contacts of Structural Units in PDB entry:
5JEM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JEM entry

There are 8 chains in PDB entry 5JEM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 196	SER 398
C	SER 2065	ALA 2106
B	LEU 196	SER 398
D	SER 2065	ALA 2106
E	LEU 196	SER 398
F	SER 2065	ALA 2106
G	GLY 199	SER 398
H	SER 2065	ALA 2106

There are 32 helices in PDB entry 5JEM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	247	251	Right-handed 310
Helix 2	AA2	A	254	267	Right-handed alpha
Helix 3	AA3	A	322	334	Right-handed alpha
Helix 4	AA4	A	357	361	Right-handed 310
Helix 5	AA5	A	370	383	Right-handed alpha
Helix 6	AA6	C	2066	2073	Right-handed alpha
Helix 7	AA7	C	2079	2093	Right-handed alpha
Helix 8	AA8	C	2093	2105	Right-handed alpha
Helix 9	AA9	B	247	251	Right-handed 310
Helix 10	AB1	B	254	267	Right-handed alpha
Helix 11	AB2	B	322	334	Right-handed alpha
Helix 12	AB3	B	357	361	Right-handed 310
Helix 13	AB4	B	370	383	Right-handed alpha
Helix 14	AB5	D	2066	2072	Right-handed alpha
Helix 15	AB6	D	2079	2092	Right-handed alpha
Helix 16	AB7	D	2093	2105	Right-handed alpha
Helix 17	AB8	E	247	251	Right-handed 310
Helix 18	AB9	E	254	267	Right-handed alpha
Helix 19	AC1	E	322	334	Right-handed alpha
Helix 20	AC2	E	357	361	Right-handed 310
Helix 21	AC3	E	370	382	Right-handed alpha
Helix 22	AC4	F	2066	2073	Right-handed alpha
Helix 23	AC5	F	2079	2093	Right-handed alpha
Helix 24	AC6	F	2093	2105	Right-handed alpha
Helix 25	AC7	G	247	251	Right-handed 310
Helix 26	AC8	G	254	267	Right-handed alpha
Helix 27	AC9	G	322	334	Right-handed alpha
Helix 28	AD1	G	357	361	Right-handed 310
Helix 29	AD2	G	370	383	Right-handed alpha
Helix 30	AD3	H	2066	2072	Right-handed alpha
Helix 31	AD4	H	2079	2093	Right-handed alpha
Helix 32	AD5	H	2093	2105	Right-handed alpha

There are 8 sheets in PDB entry 5JEM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	221	first strand
Strand 2	A	203	210	anti-parallel
Strand 3	A	363	369	anti-parallel
Strand 4	A	343	348	anti-parallel
Strand 5	A	291	296	anti-parallel
Strand 6	A	309	310	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	244	first strand
Strand 2	A	226	229	parallel
Strand 3	A	272	277	anti-parallel
Strand 4	A	280	285	anti-parallel
Strand 5	A	317	321	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	221	first strand
Strand 2	B	203	210	anti-parallel
Strand 3	B	364	369	anti-parallel
Strand 4	B	343	348	anti-parallel
Strand 5	B	291	296	anti-parallel
Strand 6	B	309	310	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	244	first strand
Strand 2	B	226	229	parallel
Strand 3	B	272	277	anti-parallel
Strand 4	B	280	285	anti-parallel
Strand 5	B	317	321	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	213	222	first strand
Strand 2	E	202	210	anti-parallel
Strand 3	E	363	369	anti-parallel
Strand 4	E	343	348	anti-parallel
Strand 5	E	291	296	anti-parallel
Strand 6	E	309	310	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	241	244	first strand
Strand 2	E	226	229	parallel
Strand 3	E	272	277	anti-parallel
Strand 4	E	280	285	anti-parallel
Strand 5	E	317	321	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	213	222	first strand
Strand 2	G	202	210	anti-parallel
Strand 3	G	363	369	anti-parallel
Strand 4	G	343	348	anti-parallel
Strand 5	G	291	296	anti-parallel
Strand 6	G	309	310	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	241	244	first strand
Strand 2	G	226	229	parallel
Strand 3	G	272	277	anti-parallel
Strand 4	G	280	285	anti-parallel
Strand 5	G	317	321	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JEM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JEM