Analysis of interatomic Contacts of Structural Units in PDB entry:
5JEN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JEN entry

There are 4 chains in PDB entry 5JEN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 76ARG 285
B
 LYS 1LEU 129
C
 LYS 75ARG 285
D
 LYS 1LEU 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5JEN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 132Right-handed alpha
Helix 2
AA2
A
188 192Right-handed 310
Helix 3
AA3
A
196 216Right-handed alpha
Helix 4
AA4
A
259 263Right-handed 310
Helix 5
AA5
A
270 275Right-handed alpha
Helix 6
AA6
A
276 278Right-handed 310
Helix 7
AA7
B
4 15Right-handed alpha
Helix 8
AA8
B
19 23Right-handed 310
Helix 9
AA9
B
24 37Right-handed alpha
Helix 10
AB1
B
79 85Right-handed 310
Helix 11
AB2
B
88 100Right-handed alpha
Helix 12
AB3
B
103 107Right-handed 310
Helix 13
AB4
B
108 115Right-handed alpha
Helix 14
AB5
B
119 125Right-handed 310
Helix 15
AB6
C
106 131Right-handed alpha
Helix 16
AB7
C
188 192Right-handed 310
Helix 17
AB8
C
196 216Right-handed alpha
Helix 18
AB9
C
259 263Right-handed 310
Helix 19
AC1
C
270 275Right-handed alpha
Helix 20
AC2
C
276 278Right-handed 310
Helix 21
AC3
D
4 15Right-handed alpha
Helix 22
AC4
D
19 23Right-handed 310
Helix 23
AC5
D
24 37Right-handed alpha
Helix 24
AC6
D
79 85Right-handed 310
Helix 25
AC7
D
88 100Right-handed alpha
Helix 26
AC8
D
103 107Right-handed 310
Helix 27
AC9
D
108 115Right-handed alpha
Helix 28
AD1
D
119 125Right-handed 310
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There are 6 sheets in PDB entry 5JEN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 89first strand
Strand 2
A
92 102anti-parallel
Strand 3
A
140 151parallel
Strand 4
A
155 165anti-parallel
Strand 5
A
169 179anti-parallel
Strand 6
A
184 185anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
248 252anti-parallel
Strand 3
A
265 269anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
51 53anti-parallel
Strand 3
B
58 59anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 88first strand
Strand 2
C
92 102anti-parallel
Strand 3
C
140 151parallel
Strand 4
C
155 165anti-parallel
Strand 5
C
169 179anti-parallel
Strand 6
C
184 185anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
240 242first strand
Strand 2
C
248 252anti-parallel
Strand 3
C
265 269anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 45first strand
Strand 2
D
51 53anti-parallel
Strand 3
D
58 59anti-parallel
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