Analysis of interatomic Contacts of Structural Units in PDB entry:
5JER

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JER entry

There are 8 chains in PDB entry 5JER (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 482	SER 491
D	GLU 482	SER 491
F	GLU 482	SER 491
H	GLU 482	SER 491
A	GLU 189	GLN 422
C	GLU 189	GLN 422
E	GLU 189	GLN 422
G	GLU 189	GLN 422

There are 23 helices in PDB entry 5JER. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	190	197	Right-handed 310
Helix 2	AA2	A	257	266	Right-handed alpha
Helix 3	AA3	A	322	334	Right-handed alpha
Helix 4	AA4	A	357	361	Right-handed 310
Helix 5	AA5	A	370	382	Right-handed alpha
Helix 6	AA6	A	405	417	Right-handed alpha
Helix 7	AA7	C	192	196	Right-handed 310
Helix 8	AA8	C	254	267	Right-handed alpha
Helix 9	AA9	C	322	334	Right-handed alpha
Helix 10	AB1	C	357	361	Right-handed 310
Helix 11	AB2	C	370	383	Right-handed alpha
Helix 12	AB3	C	404	417	Right-handed alpha
Helix 13	AB4	E	190	196	Right-handed 310
Helix 14	AB5	E	254	266	Right-handed alpha
Helix 15	AB6	E	322	335	Right-handed alpha
Helix 16	AB7	E	357	361	Right-handed 310
Helix 17	AB8	E	370	384	Right-handed alpha
Helix 18	AB9	E	405	418	Right-handed alpha
Helix 19	AC1	G	190	197	Right-handed 310
Helix 20	AC2	G	254	267	Right-handed alpha
Helix 21	AC3	G	322	334	Right-handed alpha
Helix 22	AC4	G	370	383	Right-handed alpha
Helix 23	AC5	G	404	417	Right-handed alpha

There are 12 sheets in PDB entry 5JER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	220	first strand
Strand 2	A	204	209	anti-parallel
Strand 3	A	363	369	anti-parallel
Strand 4	A	343	348	anti-parallel
Strand 5	A	291	296	anti-parallel
Strand 6	A	309	310	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	244	first strand
Strand 2	A	226	229	parallel
Strand 3	A	272	277	anti-parallel
Strand 4	A	280	285	anti-parallel
Strand 5	A	317	321	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	391	first strand
Strand 2	A	401	404	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	220	first strand
Strand 2	C	204	209	anti-parallel
Strand 3	C	363	369	anti-parallel
Strand 4	C	343	348	anti-parallel
Strand 5	C	291	296	anti-parallel
Strand 6	C	309	311	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	244	first strand
Strand 2	C	226	229	parallel
Strand 3	C	272	276	anti-parallel
Strand 4	C	280	285	anti-parallel
Strand 5	C	317	321	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	391	first strand
Strand 2	C	401	403	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	214	220	first strand
Strand 2	E	204	210	anti-parallel
Strand 3	E	363	369	anti-parallel
Strand 4	E	343	348	anti-parallel
Strand 5	E	291	296	anti-parallel
Strand 6	E	309	310	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	241	244	first strand
Strand 2	E	226	229	parallel
Strand 3	E	272	277	anti-parallel
Strand 4	E	280	285	anti-parallel
Strand 5	E	317	321	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	388	391	first strand
Strand 2	E	401	404	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	213	220	first strand
Strand 2	G	204	210	anti-parallel
Strand 3	G	363	369	anti-parallel
Strand 4	G	343	348	anti-parallel
Strand 5	G	291	296	anti-parallel
Strand 6	G	309	310	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	241	244	first strand
Strand 2	G	226	229	parallel
Strand 3	G	272	277	anti-parallel
Strand 4	G	280	285	anti-parallel
Strand 5	G	317	321	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	389	391	first strand
Strand 2	G	401	403	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JER

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JER