Analysis of interatomic Contacts of Structural Units in PDB entry:
5JFC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JFC entry

There are 2 chains in PDB entry 5JFC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	PRO 2	LYS 472
S	MET 6	VAL 284

There are 36 helices in PDB entry 5JFC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	15	20	Right-handed alpha
Helix 2	AA2	L	31	40	Right-handed alpha
Helix 3	AA3	L	50	56	Right-handed alpha
Helix 4	AA4	L	61	71	Right-handed alpha
Helix 5	AA5	L	75	89	Right-handed alpha
Helix 6	AA6	L	93	101	Right-handed alpha
Helix 7	AA7	L	102	105	Right-handed 310
Helix 8	AA8	L	106	111	Right-handed alpha
Helix 9	AA9	L	112	116	Right-handed 310
Helix 10	AB1	L	121	136	Right-handed alpha
Helix 11	AB2	L	137	149	Right-handed alpha
Helix 12	AB3	L	163	176	Right-handed alpha
Helix 13	AB4	L	191	196	Right-handed alpha
Helix 14	AB5	L	203	218	Right-handed alpha
Helix 15	AB6	L	232	240	Right-handed alpha
Helix 16	AB7	L	268	277	Right-handed alpha
Helix 17	AB8	L	279	283	Right-handed 310
Helix 18	AB9	L	302	315	Right-handed alpha
Helix 19	AC1	L	326	330	Right-handed 310
Helix 20	AC2	L	333	344	Right-handed alpha
Helix 21	AC3	L	408	415	Right-handed alpha
Helix 22	AC4	L	443	448	Right-handed alpha
Helix 23	AC5	L	451	472	Right-handed alpha
Helix 24	AC6	S	27	34	Right-handed alpha
Helix 25	AC7	S	60	62	Right-handed 310
Helix 26	AC8	S	73	81	Right-handed alpha
Helix 27	AC9	S	114	129	Right-handed alpha
Helix 28	AD1	S	141	145	Right-handed 310
Helix 29	AD2	S	147	153	Right-handed alpha
Helix 30	AD3	S	172	183	Right-handed alpha
Helix 31	AD4	S	195	207	Right-handed alpha
Helix 32	AD5	S	208	210	Right-handed 310
Helix 33	AD6	S	242	246	Right-handed alpha
Helix 34	AD7	S	252	254	Right-handed 310
Helix 35	AD8	S	255	264	Right-handed alpha
Helix 36	AD9	S	266	280	Right-handed alpha

There are 8 sheets in PDB entry 5JFC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	220	222	first strand
Strand 2	L	179	183	parallel
Strand 3	L	156	160	parallel
Strand 4	L	242	245	parallel
Strand 5	L	439	441	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	251	252	first strand
Strand 2	L	405	406	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	265	267	first strand
Strand 2	L	398	401	parallel
Strand 3	L	295	299	parallel
Strand 4	L	318	322	parallel
Strand 5	L	346	348	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	351	358	first strand
Strand 2	L	364	373	anti-parallel
Strand 3	L	386	395	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	57	59	first strand
Strand 2	S	64	70	anti-parallel
Strand 3	S	20	26	anti-parallel
Strand 4	S	8	17	anti-parallel
Strand 5	S	87	88	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	51	54	first strand
Strand 2	S	39	43	anti-parallel
Strand 3	S	90	95	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	169	170	first strand
Strand 2	S	157	162	parallel
Strand 3	S	132	139	parallel
Strand 4	S	106	112	parallel
Strand 5	S	189	193	parallel
Strand 6	S	213	216	parallel
Strand 7	S	248	250	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	232	235	first strand
Strand 2	S	238	241	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JFC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JFC