Analysis of interatomic Contacts of Structural Units in PDB entry:
5JFF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JFF entry

There are 4 chains in PDB entry 5JFF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 10GLU 198
B
 LYS 3TYR 53
C
 ASP 10ALA 196
D
 TYR -10GLU 54
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5JFF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 45Right-handed alpha
Helix 2
AA2
A
55 68Right-handed alpha
Helix 3
AA3
A
91 93Right-handed 310
Helix 4
AA4
A
94 109Right-handed alpha
Helix 5
AA5
A
110 113Right-handed 310
Helix 6
AA6
A
116 135Right-handed alpha
Helix 7
AA7
A
140 156Right-handed alpha
Helix 8
AA8
A
166 179Right-handed alpha
Helix 9
AA9
A
182 192Right-handed alpha
Helix 10
AB1
B
5 27Right-handed alpha
Helix 11
AB2
B
38 53Right-handed alpha
Helix 12
AB3
C
28 45Right-handed alpha
Helix 13
AB4
C
55 68Right-handed alpha
Helix 14
AB5
C
91 93Right-handed 310
Helix 15
AB6
C
94 109Right-handed alpha
Helix 16
AB7
C
110 113Right-handed 310
Helix 17
AB8
C
116 135Right-handed alpha
Helix 18
AB9
C
140 156Right-handed alpha
Helix 19
AC1
C
166 179Right-handed alpha
Helix 20
AC2
C
182 192Right-handed alpha
Helix 21
AC3
D
-2 27Right-handed alpha
Helix 22
AC4
D
38 54Right-handed alpha
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There are 4 sheets in PDB entry 5JFF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
87 88anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
193 195anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 84first strand
Strand 2
C
87 88anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
158 160first strand
Strand 2
C
193 195anti-parallel
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