Analysis of interatomic Contacts of Structural Units in PDB entry:
5JFK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JFK entry

There are 2 chains in PDB entry 5JFK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 40	GLY 625
B	LEU 40	GLY 625

There are 40 helices in PDB entry 5JFK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	78	Right-handed alpha
Helix 2	AA2	A	98	104	Right-handed 310
Helix 3	AA3	A	122	128	Right-handed 310
Helix 4	AA4	A	148	152	Right-handed 310
Helix 5	AA5	A	170	176	Right-handed 310
Helix 6	AA6	A	194	200	Right-handed 310
Helix 7	AA7	A	218	224	Right-handed 310
Helix 8	AA8	A	242	248	Right-handed 310
Helix 9	AA9	A	266	272	Right-handed 310
Helix 10	AB1	A	290	296	Right-handed 310
Helix 11	AB2	A	314	320	Right-handed 310
Helix 12	AB3	A	338	344	Right-handed 310
Helix 13	AB4	A	410	416	Right-handed 310
Helix 14	AB5	A	436	440	Right-handed 310
Helix 15	AB6	A	458	464	Right-handed 310
Helix 16	AB7	A	484	488	Right-handed 310
Helix 17	AB8	A	531	535	Right-handed 310
Helix 18	AB9	A	553	559	Right-handed 310
Helix 19	AC1	A	577	583	Right-handed 310
Helix 20	AC2	A	609	613	Right-handed 310
Helix 21	AC3	B	70	76	Right-handed alpha
Helix 22	AC4	B	98	104	Right-handed 310
Helix 23	AC5	B	122	128	Right-handed 310
Helix 24	AC6	B	148	152	Right-handed 310
Helix 25	AC7	B	170	176	Right-handed 310
Helix 26	AC8	B	194	200	Right-handed 310
Helix 27	AC9	B	218	224	Right-handed 310
Helix 28	AD1	B	242	248	Right-handed 310
Helix 29	AD2	B	266	272	Right-handed 310
Helix 30	AD3	B	290	296	Right-handed 310
Helix 31	AD4	B	314	320	Right-handed 310
Helix 32	AD5	B	338	344	Right-handed 310
Helix 33	AD6	B	410	416	Right-handed 310
Helix 34	AD7	B	436	440	Right-handed 310
Helix 35	AD8	B	460	464	Right-handed 310
Helix 36	AD9	B	484	488	Right-handed 310
Helix 37	AE1	B	531	535	Right-handed 310
Helix 38	AE2	B	553	559	Right-handed 310
Helix 39	AE3	B	577	583	Right-handed 310
Helix 40	AE4	B	609	613	Right-handed 310

There are 17 sheets in PDB entry 5JFK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	109	111	parallel
Strand 3	A	133	135	parallel
Strand 4	A	157	159	parallel
Strand 5	A	181	183	parallel
Strand 6	A	205	207	parallel
Strand 7	A	229	231	parallel
Strand 8	A	253	254	parallel
Strand 9	A	277	279	parallel
Strand 10	A	301	303	parallel
Strand 11	A	325	327	parallel
Strand 12	A	349	351	parallel
Strand 13	A	373	375	parallel
Strand 14	A	397	399	parallel
Strand 15	A	421	423	parallel
Strand 16	A	445	447	parallel
Strand 17	A	469	470	parallel
Strand 18	A	493	494	parallel
Strand 19	A	516	518	parallel
Strand 20	A	540	542	parallel
Strand 21	A	564	566	parallel
Strand 22	A	588	590	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	116	117	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	144	first strand
Strand 2	A	164	166	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	191	first strand
Strand 2	A	212	216	parallel
Strand 3	A	236	238	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	264	first strand
Strand 2	A	284	286	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	312	first strand
Strand 2	A	332	334	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	408	first strand
Strand 2	A	428	431	parallel
Strand 3	A	452	453	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	502	503	first strand
Strand 2	A	523	524	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	550	first strand
Strand 2	A	571	574	parallel
Strand 3	A	595	596	parallel

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There are 22 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	109	111	parallel
Strand 3	B	133	135	parallel
Strand 4	B	157	159	parallel
Strand 5	B	181	183	parallel
Strand 6	B	205	207	parallel
Strand 7	B	229	231	parallel
Strand 8	B	253	254	parallel
Strand 9	B	277	279	parallel
Strand 10	B	301	303	parallel
Strand 11	B	325	327	parallel
Strand 12	B	349	351	parallel
Strand 13	B	373	375	parallel
Strand 14	B	397	399	parallel
Strand 15	B	421	423	parallel
Strand 16	B	445	447	parallel
Strand 17	B	469	470	parallel
Strand 18	B	493	494	parallel
Strand 19	B	516	518	parallel
Strand 20	B	540	542	parallel
Strand 21	B	564	566	parallel
Strand 22	B	588	590	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	95	first strand
Strand 2	B	116	117	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	144	first strand
Strand 2	B	164	166	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	191	first strand
Strand 2	B	212	216	parallel
Strand 3	B	236	238	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	264	first strand
Strand 2	B	284	286	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	311	first strand
Strand 2	B	332	333	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	408	first strand
Strand 2	B	428	431	parallel
Strand 3	B	452	453	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	503	first strand
Strand 2	B	523	527	parallel
Strand 3	B	547	550	parallel
Strand 4	B	571	574	parallel
Strand 5	B	595	596	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JFK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JFK