Analysis of interatomic Contacts of Structural Units in PDB entry:
5JFL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JFL entry

There are 8 chains in PDB entry 5JFL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 85	ARG 524
B	VAL 86	ARG 524
C	VAL 86	ARG 524
D	SER 44	ARG 524
E	VAL 86	ARG 524
F	ALA 85	ARG 524
G	SER 44	ARG 524
H	VAL 86	ARG 524

There are161 helices in PDB entry 5JFL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	93	109	Right-handed alpha
Helix 2	AA2	A	112	129	Right-handed alpha
Helix 3	AA3	A	129	145	Right-handed alpha
Helix 4	AA4	A	148	162	Right-handed alpha
Helix 5	AA5	A	165	169	Right-handed 310
Helix 6	AA6	A	199	214	Right-handed alpha
Helix 7	AA7	A	223	225	Right-handed 310
Helix 8	AA8	A	226	245	Right-handed alpha
Helix 9	AA9	A	258	268	Right-handed alpha
Helix 10	AB1	A	279	287	Right-handed alpha
Helix 11	AB2	A	310	324	Right-handed alpha
Helix 12	AB3	A	325	328	Right-handed 310
Helix 13	AB4	A	342	353	Right-handed alpha
Helix 14	AB5	A	360	372	Right-handed alpha
Helix 15	AB6	A	373	377	Right-handed 310
Helix 16	AB7	A	386	393	Right-handed alpha
Helix 17	AB8	A	413	418	Right-handed alpha
Helix 18	AB9	A	432	443	Right-handed alpha
Helix 19	AC1	A	457	469	Right-handed alpha
Helix 20	AC2	A	478	484	Right-handed 310
Helix 21	AC3	A	505	508	Right-handed 310
Helix 22	AC4	B	93	109	Right-handed alpha
Helix 23	AC5	B	112	129	Right-handed alpha
Helix 24	AC6	B	129	145	Right-handed alpha
Helix 25	AC7	B	148	162	Right-handed alpha
Helix 26	AC8	B	165	169	Right-handed 310
Helix 27	AC9	B	199	214	Right-handed alpha
Helix 28	AD1	B	223	225	Right-handed 310
Helix 29	AD2	B	226	245	Right-handed alpha
Helix 30	AD3	B	259	267	Right-handed alpha
Helix 31	AD4	B	279	287	Right-handed alpha
Helix 32	AD5	B	310	323	Right-handed alpha
Helix 33	AD6	B	324	328	Right-handed 310
Helix 34	AD7	B	342	353	Right-handed alpha
Helix 35	AD8	B	360	372	Right-handed alpha
Helix 36	AD9	B	386	393	Right-handed alpha
Helix 37	AE1	B	413	418	Right-handed alpha
Helix 38	AE2	B	432	444	Right-handed alpha
Helix 39	AE3	B	457	469	Right-handed alpha
Helix 40	AE4	B	478	484	Right-handed 310
Helix 41	AE5	B	505	508	Right-handed 310
Helix 42	AE6	C	93	109	Right-handed alpha
Helix 43	AE7	C	112	129	Right-handed alpha
Helix 44	AE8	C	129	145	Right-handed alpha
Helix 45	AE9	C	148	163	Right-handed alpha
Helix 46	AF1	C	165	169	Right-handed 310
Helix 47	AF2	C	199	214	Right-handed alpha
Helix 48	AF3	C	223	225	Right-handed 310
Helix 49	AF4	C	226	244	Right-handed alpha
Helix 50	AF5	C	258	268	Right-handed alpha
Helix 51	AF6	C	279	287	Right-handed alpha
Helix 52	AF7	C	310	323	Right-handed alpha
Helix 53	AF8	C	324	328	Right-handed 310
Helix 54	AF9	C	342	353	Right-handed alpha
Helix 55	AG1	C	360	371	Right-handed alpha
Helix 56	AG2	C	386	394	Right-handed alpha
Helix 57	AG3	C	413	418	Right-handed alpha
Helix 58	AG4	C	433	444	Right-handed alpha
Helix 59	AG5	C	457	469	Right-handed alpha
Helix 60	AG6	C	478	484	Right-handed 310
Helix 61	AG7	C	506	510	Right-handed 310
Helix 62	AG8	D	93	109	Right-handed alpha
Helix 63	AG9	D	112	129	Right-handed alpha
Helix 64	AH1	D	129	145	Right-handed alpha
Helix 65	AH2	D	148	163	Right-handed alpha
Helix 66	AH3	D	165	169	Right-handed 310
Helix 67	AH4	D	199	214	Right-handed alpha
Helix 68	AH5	D	223	225	Right-handed 310
Helix 69	AH6	D	226	244	Right-handed alpha
Helix 70	AH7	D	258	268	Right-handed alpha
Helix 71	AH8	D	279	287	Right-handed alpha
Helix 72	AH9	D	310	324	Right-handed alpha
Helix 73	AI1	D	325	328	Right-handed 310
Helix 74	AI2	D	340	353	Right-handed alpha
Helix 75	AI3	D	360	372	Right-handed alpha
Helix 76	AI4	D	386	394	Right-handed alpha
Helix 77	AI5	D	413	418	Right-handed alpha
Helix 78	AI6	D	432	445	Right-handed alpha
Helix 79	AI7	D	457	469	Right-handed alpha
Helix 80	AI8	D	478	484	Right-handed 310
Helix 81	AI9	D	505	508	Right-handed 310
Helix 82	AJ1	E	93	109	Right-handed alpha
Helix 83	AJ2	E	112	129	Right-handed alpha
Helix 84	AJ3	E	129	145	Right-handed alpha
Helix 85	AJ4	E	148	163	Right-handed alpha
Helix 86	AJ5	E	165	169	Right-handed 310
Helix 87	AJ6	E	199	214	Right-handed alpha
Helix 88	AJ7	E	223	225	Right-handed 310
Helix 89	AJ8	E	226	244	Right-handed alpha
Helix 90	AJ9	E	258	268	Right-handed alpha
Helix 91	AK1	E	279	287	Right-handed alpha
Helix 92	AK2	E	310	323	Right-handed alpha
Helix 93	AK3	E	324	328	Right-handed 310
Helix 94	AK4	E	340	352	Right-handed alpha
Helix 95	AK5	E	360	372	Right-handed alpha
Helix 96	AK6	E	386	393	Right-handed alpha
Helix 97	AK7	E	413	418	Right-handed alpha
Helix 98	AK8	E	432	444	Right-handed alpha
Helix 99	AK9	E	457	469	Right-handed alpha
Helix 100	AL1	E	478	482	Right-handed 310
Helix 101	AL2	E	505	508	Right-handed 310
Helix 102	AL3	F	93	109	Right-handed alpha
Helix 103	AL4	F	112	129	Right-handed alpha
Helix 104	AL5	F	129	145	Right-handed alpha
Helix 105	AL6	F	148	163	Right-handed alpha
Helix 106	AL7	F	165	169	Right-handed 310
Helix 107	AL8	F	199	214	Right-handed alpha
Helix 108	AL9	F	223	226	Right-handed 310
Helix 109	AM1	F	227	244	Right-handed alpha
Helix 110	AM2	F	258	267	Right-handed alpha
Helix 111	AM3	F	279	287	Right-handed alpha
Helix 112	AM4	F	310	323	Right-handed alpha
Helix 113	AM5	F	324	328	Right-handed 310
Helix 114	AM6	F	340	352	Right-handed alpha
Helix 115	AM7	F	360	366	Right-handed alpha
Helix 116	AM8	F	386	393	Right-handed alpha
Helix 117	AM9	F	413	418	Right-handed alpha
Helix 118	AN1	F	432	444	Right-handed alpha
Helix 119	AN2	F	457	469	Right-handed alpha
Helix 120	AN3	F	478	484	Right-handed 310
Helix 121	AN4	F	505	508	Right-handed 310
Helix 122	AN5	G	93	109	Right-handed alpha
Helix 123	AN6	G	112	129	Right-handed alpha
Helix 124	AN7	G	129	145	Right-handed alpha
Helix 125	AN8	G	148	163	Right-handed alpha
Helix 126	AN9	G	165	169	Right-handed 310
Helix 127	AO1	G	199	214	Right-handed alpha
Helix 128	AO2	G	223	225	Right-handed 310
Helix 129	AO3	G	226	244	Right-handed alpha
Helix 130	AO4	G	258	267	Right-handed alpha
Helix 131	AO5	G	279	287	Right-handed alpha
Helix 132	AO6	G	310	323	Right-handed alpha
Helix 133	AO7	G	324	328	Right-handed 310
Helix 134	AO8	G	342	353	Right-handed alpha
Helix 135	AO9	G	360	372	Right-handed alpha
Helix 136	AP1	G	386	394	Right-handed alpha
Helix 137	AP2	G	413	418	Right-handed alpha
Helix 138	AP3	G	432	445	Right-handed alpha
Helix 139	AP4	G	457	469	Right-handed alpha
Helix 140	AP5	G	478	484	Right-handed 310
Helix 141	AP6	G	506	508	Right-handed 310
Helix 142	AP7	H	93	109	Right-handed alpha
Helix 143	AP8	H	112	129	Right-handed alpha
Helix 144	AP9	H	129	145	Right-handed alpha
Helix 145	AQ1	H	148	162	Right-handed alpha
Helix 146	AQ2	H	165	169	Right-handed 310
Helix 147	AQ3	H	199	215	Right-handed alpha
Helix 148	AQ4	H	223	225	Right-handed 310
Helix 149	AQ5	H	226	243	Right-handed alpha
Helix 150	AQ6	H	258	268	Right-handed alpha
Helix 151	AQ7	H	279	287	Right-handed alpha
Helix 152	AQ8	H	310	323	Right-handed alpha
Helix 153	AQ9	H	324	328	Right-handed 310
Helix 154	AR1	H	340	353	Right-handed alpha
Helix 155	AR2	H	360	372	Right-handed alpha
Helix 156	AR3	H	386	393	Right-handed alpha
Helix 157	AR4	H	413	418	Right-handed alpha
Helix 158	AR5	H	432	445	Right-handed alpha
Helix 159	AR6	H	457	469	Right-handed alpha
Helix 160	AR7	H	478	482	Right-handed 310
Helix 161	AR8	H	506	508	Right-handed 310

There are 23 sheets in PDB entry 5JFL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	251	254	parallel
Strand 3	A	217	221	parallel
Strand 4	A	190	194	parallel
Strand 5	A	271	277	parallel
Strand 6	A	292	296	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	176	first strand
Strand 2	A	179	187	anti-parallel
Strand 3	A	510	518	anti-parallel
Strand 4	C	472	475	parallel
Strand 5	C	450	454	parallel
Strand 6	C	302	305	parallel
Strand 7	C	335	339	parallel
Strand 8	C	424	430	parallel
Strand 9	C	404	408	parallel
Strand 10	C	355	357	parallel

Back to list of sheets
Back to top of page

There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	357	first strand
Strand 2	A	404	408	parallel
Strand 3	A	424	430	parallel
Strand 4	A	335	339	parallel
Strand 5	A	302	305	parallel
Strand 6	A	450	454	parallel
Strand 7	A	472	475	parallel
Strand 8	C	511	518	parallel
Strand 9	C	179	186	anti-parallel
Strand 10	C	172	176	anti-parallel
Strand 11	D	171	176	anti-parallel
Strand 12	D	179	187	anti-parallel
Strand 13	D	510	518	anti-parallel
Strand 14	B	472	475	parallel
Strand 15	B	450	454	parallel
Strand 16	B	302	305	parallel
Strand 17	B	335	339	parallel
Strand 18	B	424	430	parallel
Strand 19	B	404	408	parallel
Strand 20	B	355	357	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	496	first strand
Strand 2	A	502	503	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	251	254	parallel
Strand 3	B	217	221	parallel
Strand 4	B	190	194	parallel
Strand 5	B	273	277	parallel
Strand 6	B	292	296	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	176	first strand
Strand 2	B	179	187	anti-parallel
Strand 3	B	510	518	anti-parallel
Strand 4	D	472	475	parallel
Strand 5	D	450	454	parallel
Strand 6	D	302	305	parallel
Strand 7	D	335	339	parallel
Strand 8	D	424	430	parallel
Strand 9	D	404	408	parallel
Strand 10	D	355	357	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	495	496	first strand
Strand 2	B	502	503	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	251	254	parallel
Strand 3	C	217	221	parallel
Strand 4	C	190	194	parallel
Strand 5	C	273	277	parallel
Strand 6	C	292	296	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	373	first strand
Strand 2	C	377	378	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	495	496	first strand
Strand 2	C	502	503	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	91	first strand
Strand 2	D	251	254	parallel
Strand 3	D	217	221	parallel
Strand 4	D	190	194	parallel
Strand 5	D	271	277	parallel
Strand 6	D	292	296	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	495	496	first strand
Strand 2	D	502	503	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	91	first strand
Strand 2	E	251	254	parallel
Strand 3	E	217	221	parallel
Strand 4	E	190	194	parallel
Strand 5	E	273	277	parallel
Strand 6	E	293	296	parallel

Back to list of sheets
Back to top of page

There are 18 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	355	357	first strand
Strand 2	G	404	408	parallel
Strand 3	G	424	430	parallel
Strand 4	G	335	339	parallel
Strand 5	G	302	305	parallel
Strand 6	G	450	454	parallel
Strand 7	G	472	475	parallel
Strand 8	E	510	518	parallel
Strand 9	E	179	187	anti-parallel
Strand 10	E	171	176	anti-parallel
Strand 11	F	171	176	anti-parallel
Strand 12	F	179	187	anti-parallel
Strand 13	F	510	518	anti-parallel
Strand 14	H	472	475	parallel
Strand 15	H	450	454	parallel
Strand 16	H	302	305	parallel
Strand 17	H	335	339	parallel
Strand 18	H	427	430	parallel

Back to list of sheets
Back to top of page

There are 20 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	355	357	first strand
Strand 2	E	404	408	parallel
Strand 3	E	424	430	parallel
Strand 4	E	336	339	parallel
Strand 5	E	303	305	parallel
Strand 6	E	450	454	parallel
Strand 7	E	472	475	parallel
Strand 8	G	510	518	parallel
Strand 9	G	179	187	anti-parallel
Strand 10	G	171	176	anti-parallel
Strand 11	H	172	176	anti-parallel
Strand 12	H	179	187	anti-parallel
Strand 13	H	510	518	anti-parallel
Strand 14	F	472	475	parallel
Strand 15	F	450	454	parallel
Strand 16	F	302	305	parallel
Strand 17	F	335	339	parallel
Strand 18	F	424	430	parallel
Strand 19	F	404	408	parallel
Strand 20	F	355	357	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	495	496	first strand
Strand 2	E	502	503	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	91	first strand
Strand 2	F	251	254	parallel
Strand 3	F	217	221	parallel
Strand 4	F	190	194	parallel
Strand 5	F	271	277	parallel
Strand 6	F	292	296	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	495	496	first strand
Strand 2	F	502	503	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	91	first strand
Strand 2	G	251	254	parallel
Strand 3	G	217	221	parallel
Strand 4	G	190	194	parallel
Strand 5	G	271	277	parallel
Strand 6	G	292	296	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	495	496	first strand
Strand 2	G	502	503	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	91	first strand
Strand 2	H	251	254	parallel
Strand 3	H	217	220	parallel
Strand 4	H	190	194	parallel
Strand 5	H	271	277	parallel
Strand 6	H	293	296	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	355	358	first strand
Strand 2	H	404	407	parallel
Strand 3	H	424	425	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	495	496	first strand
Strand 2	H	502	503	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JFL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JFL