Analysis of interatomic Contacts of Structural Units in PDB entry:
5JFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JFN entry

There are 8 chains in PDB entry 5JFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 86PRO 329
A
 VAL 331ARG 524
B
 VAL 86PRO 329
B
 VAL 331ARG 524
C
 LYS 43PRO 329
C
 VAL 331ARG 524
D
 VAL 86PRO 329
D
 VAL 331ARG 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 5JFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 109Right-handed alpha
Helix 2
AA2
A
112 129Right-handed alpha
Helix 3
AA3
A
129 145Right-handed alpha
Helix 4
AA4
A
148 163Right-handed alpha
Helix 5
AA5
A
165 169Right-handed 310
Helix 6
AA6
A
199 214Right-handed alpha
Helix 7
AA7
A
223 225Right-handed 310
Helix 8
AA8
A
226 245Right-handed alpha
Helix 9
AA9
A
258 268Right-handed alpha
Helix 10
AB1
A
279 287Right-handed alpha
Helix 11
AB2
A
310 324Right-handed alpha
Helix 12
AB3
A
325 328Right-handed 310
Helix 13
AB4
A
340 353Right-handed alpha
Helix 14
AB5
A
360 372Right-handed alpha
Helix 15
AB6
A
386 393Right-handed alpha
Helix 16
AB7
A
413 418Right-handed alpha
Helix 17
AB8
A
432 444Right-handed alpha
Helix 18
AB9
A
457 469Right-handed alpha
Helix 19
AC1
A
478 484Right-handed 310
Helix 20
AC2
A
505 508Right-handed 310
Helix 21
AC3
B
93 109Right-handed alpha
Helix 22
AC4
B
112 129Right-handed alpha
Helix 23
AC5
B
129 145Right-handed alpha
Helix 24
AC6
B
148 163Right-handed alpha
Helix 25
AC7
B
165 169Right-handed 310
Helix 26
AC8
B
199 214Right-handed alpha
Helix 27
AC9
B
226 244Right-handed alpha
Helix 28
AD1
B
258 268Right-handed alpha
Helix 29
AD2
B
279 287Right-handed alpha
Helix 30
AD3
B
310 324Right-handed alpha
Helix 31
AD4
B
325 328Right-handed 310
Helix 32
AD5
B
340 353Right-handed alpha
Helix 33
AD6
B
360 372Right-handed alpha
Helix 34
AD7
B
386 393Right-handed alpha
Helix 35
AD8
B
413 418Right-handed alpha
Helix 36
AD9
B
432 444Right-handed alpha
Helix 37
AE1
B
457 469Right-handed alpha
Helix 38
AE2
B
478 484Right-handed 310
Helix 39
AE3
B
505 508Right-handed 310
Helix 40
AE4
C
93 109Right-handed alpha
Helix 41
AE5
C
112 129Right-handed alpha
Helix 42
AE6
C
129 145Right-handed alpha
Helix 43
AE7
C
148 163Right-handed alpha
Helix 44
AE8
C
165 169Right-handed 310
Helix 45
AE9
C
199 214Right-handed alpha
Helix 46
AF1
C
223 225Right-handed 310
Helix 47
AF2
C
226 244Right-handed alpha
Helix 48
AF3
C
258 268Right-handed alpha
Helix 49
AF4
C
279 287Right-handed alpha
Helix 50
AF5
C
310 324Right-handed alpha
Helix 51
AF6
C
325 328Right-handed 310
Helix 52
AF7
C
340 353Right-handed alpha
Helix 53
AF8
C
360 372Right-handed alpha
Helix 54
AF9
C
386 393Right-handed alpha
Helix 55
AG1
C
413 418Right-handed alpha
Helix 56
AG2
C
432 445Right-handed alpha
Helix 57
AG3
C
457 469Right-handed alpha
Helix 58
AG4
C
478 484Right-handed 310
Helix 59
AG5
C
505 508Right-handed 310
Helix 60
AG6
D
93 109Right-handed alpha
Helix 61
AG7
D
112 129Right-handed alpha
Helix 62
AG8
D
129 145Right-handed alpha
Helix 63
AG9
D
148 163Right-handed alpha
Helix 64
AH1
D
165 169Right-handed 310
Helix 65
AH2
D
199 214Right-handed alpha
Helix 66
AH3
D
223 225Right-handed 310
Helix 67
AH4
D
226 244Right-handed alpha
Helix 68
AH5
D
258 268Right-handed alpha
Helix 69
AH6
D
279 287Right-handed alpha
Helix 70
AH7
D
310 324Right-handed alpha
Helix 71
AH8
D
325 328Right-handed 310
Helix 72
AH9
D
340 353Right-handed alpha
Helix 73
AI1
D
360 372Right-handed alpha
Helix 74
AI2
D
379 383Right-handed 310
Helix 75
AI3
D
386 394Right-handed alpha
Helix 76
AI4
D
413 418Right-handed alpha
Helix 77
AI5
D
432 444Right-handed alpha
Helix 78
AI6
D
457 469Right-handed alpha
Helix 79
AI7
D
478 484Right-handed 310
Helix 80
AI8
D
505 508Right-handed 310
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There are 8 sheets in PDB entry 5JFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
251 254parallel
Strand 3
A
217 221parallel
Strand 4
A
190 194parallel
Strand 5
A
271 276parallel
Strand 6
A
292 295parallel
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There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
355 357first strand
Strand 2
C
404 408parallel
Strand 3
C
424 430parallel
Strand 4
C
335 339parallel
Strand 5
C
302 305parallel
Strand 6
C
450 454parallel
Strand 7
C
472 475parallel
Strand 8
A
510 518parallel
Strand 9
A
179 187anti-parallel
Strand 10
A
171 176anti-parallel
Strand 11
B
171 176anti-parallel
Strand 12
B
179 187anti-parallel
Strand 13
B
510 518anti-parallel
Strand 14
D
472 475parallel
Strand 15
D
450 454parallel
Strand 16
D
302 305parallel
Strand 17
D
335 339parallel
Strand 18
D
424 430parallel
Strand 19
D
404 408parallel
Strand 20
D
355 357parallel
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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 357first strand
Strand 2
A
404 408parallel
Strand 3
A
424 430parallel
Strand 4
A
335 339parallel
Strand 5
A
302 305parallel
Strand 6
A
450 454parallel
Strand 7
A
472 475parallel
Strand 8
C
510 518parallel
Strand 9
C
179 187anti-parallel
Strand 10
C
171 176anti-parallel
Strand 11
D
171 176anti-parallel
Strand 12
D
179 187anti-parallel
Strand 13
D
510 518anti-parallel
Strand 14
B
472 475parallel
Strand 15
B
450 454parallel
Strand 16
B
302 305parallel
Strand 17
B
335 339parallel
Strand 18
B
424 430parallel
Strand 19
B
404 408parallel
Strand 20
B
355 357parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 91first strand
Strand 2
B
251 254parallel
Strand 3
B
217 222parallel
Strand 4
B
190 195parallel
Strand 5
B
271 277parallel
Strand 6
B
292 296parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
495 496first strand
Strand 2
B
502 503anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 91first strand
Strand 2
C
251 254parallel
Strand 3
C
217 221parallel
Strand 4
C
190 194parallel
Strand 5
C
273 277parallel
Strand 6
C
292 296parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
495 496first strand
Strand 2
C
502 503anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
90 91first strand
Strand 2
D
251 254parallel
Strand 3
D
217 221parallel
Strand 4
D
190 194parallel
Strand 5
D
273 276parallel
Strand 6
D
292 295parallel
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