Analysis of interatomic Contacts of Structural Units in PDB entry:
5JFQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JFQ entry

There are 2 chains in PDB entry 5JFQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2ARG 317
B
 GLU 4ARG 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5JFQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 21Right-handed alpha
Helix 2
AA2
A
26 39Right-handed alpha
Helix 3
AA3
A
43 56Right-handed alpha
Helix 4
AA4
A
59 62Right-handed 310
Helix 5
AA5
A
63 86Right-handed alpha
Helix 6
AA6
A
95 101Right-handed alpha
Helix 7
AA7
A
101 121Right-handed alpha
Helix 8
AA8
A
126 157Right-handed alpha
Helix 9
AA9
A
161 173Right-handed alpha
Helix 10
AB1
A
173 188Right-handed alpha
Helix 11
AB2
A
191 217Right-handed alpha
Helix 12
AB3
A
229 234Right-handed alpha
Helix 13
AB4
A
238 247Right-handed alpha
Helix 14
AB5
A
265 274Right-handed alpha
Helix 15
AB6
A
275 296Right-handed alpha
Helix 16
AB7
A
301 317Right-handed alpha
Helix 17
AB8
B
5 21Right-handed alpha
Helix 18
AB9
B
26 34Right-handed alpha
Helix 19
AC1
B
34 40Right-handed alpha
Helix 20
AC2
B
43 56Right-handed alpha
Helix 21
AC3
B
59 62Right-handed 310
Helix 22
AC4
B
63 86Right-handed alpha
Helix 23
AC5
B
95 101Right-handed alpha
Helix 24
AC6
B
101 121Right-handed alpha
Helix 25
AC7
B
126 157Right-handed alpha
Helix 26
AC8
B
161 173Right-handed alpha
Helix 27
AC9
B
174 188Right-handed alpha
Helix 28
AD1
B
191 219Right-handed alpha
Helix 29
AD2
B
229 234Right-handed alpha
Helix 30
AD3
B
238 247Right-handed alpha
Helix 31
AD4
B
260 274Right-handed alpha
Helix 32
AD5
B
276 296Right-handed alpha
Helix 33
AD6
B
301 314Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5JFQ.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 90first strand
Strand 2
B
93 94anti-parallel
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