Analysis of interatomic Contacts of Structural Units in PDB entry:
5JFY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JFY entry

There are 4 chains in PDB entry 5JFY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 21PHE 139
B
 GLY 21PHE 139
C
 ALA 20ASP 140
D
 GLY 21PHE 139
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5JFY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 29Right-handed 310
Helix 2
AA2
A
30 48Right-handed alpha
Helix 3
AA3
A
70 75Right-handed alpha
Helix 4
AA4
A
80 94Right-handed alpha
Helix 5
AA5
A
110 121Right-handed alpha
Helix 6
AA6
B
29 47Right-handed alpha
Helix 7
AA7
B
70 75Right-handed alpha
Helix 8
AA8
B
80 94Right-handed alpha
Helix 9
AA9
B
110 120Right-handed alpha
Helix 10
AB1
C
27 29Right-handed 310
Helix 11
AB2
C
30 47Right-handed alpha
Helix 12
AB3
C
70 75Right-handed alpha
Helix 13
AB4
C
80 94Right-handed alpha
Helix 14
AB5
C
110 121Right-handed alpha
Helix 15
AB6
D
27 29Right-handed 310
Helix 16
AB7
D
30 47Right-handed alpha
Helix 17
AB8
D
70 75Right-handed alpha
Helix 18
AB9
D
80 94Right-handed alpha
Helix 19
AC1
D
110 120Right-handed alpha
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There are 4 sheets in PDB entry 5JFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
134 138anti-parallel
Strand 3
A
124 128anti-parallel
Strand 4
A
101 105parallel
Strand 5
A
54 59anti-parallel
Strand 6
A
62 68anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 24first strand
Strand 2
B
133 138anti-parallel
Strand 3
B
124 129anti-parallel
Strand 4
B
102 105parallel
Strand 5
B
54 59anti-parallel
Strand 6
B
62 68anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 24first strand
Strand 2
C
133 138anti-parallel
Strand 3
C
124 129anti-parallel
Strand 4
C
102 105parallel
Strand 5
C
54 59anti-parallel
Strand 6
C
62 68anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 24first strand
Strand 2
D
135 138anti-parallel
Strand 3
D
124 127anti-parallel
Strand 4
D
102 105parallel
Strand 5
D
54 59anti-parallel
Strand 6
D
62 68anti-parallel
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