Analysis of interatomic Contacts of Structural Units in PDB entry:
5JG4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JG4 entry

There are 2 chains in PDB entry 5JG4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6LYS 400
B
 THR 6LYS 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5JG4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 31Right-handed alpha
Helix 2
AA2
A
34 38Right-handed 310
Helix 3
AA3
A
41 64Right-handed alpha
Helix 4
AA4
A
68 89Right-handed alpha
Helix 5
AA5
A
95 98Right-handed 310
Helix 6
AA6
A
99 110Right-handed alpha
Helix 7
AA7
A
118 133Right-handed alpha
Helix 8
AA8
A
134 145Right-handed 310
Helix 9
AA9
A
156 181Right-handed alpha
Helix 10
AB1
A
191 195Right-handed 310
Helix 11
AB2
A
202 208Right-handed alpha
Helix 12
AB3
A
211 230Right-handed alpha
Helix 13
AB4
A
234 238Right-handed 310
Helix 14
AB5
A
239 259Right-handed alpha
Helix 15
AB6
A
265 288Right-handed alpha
Helix 16
AB7
A
301 312Right-handed alpha
Helix 17
AB8
A
317 336Right-handed alpha
Helix 18
AB9
A
365 398Right-handed alpha
Helix 19
AC1
B
11 31Right-handed alpha
Helix 20
AC2
B
34 38Right-handed 310
Helix 21
AC3
B
41 64Right-handed alpha
Helix 22
AC4
B
68 89Right-handed alpha
Helix 23
AC5
B
95 98Right-handed 310
Helix 24
AC6
B
99 110Right-handed alpha
Helix 25
AC7
B
118 133Right-handed alpha
Helix 26
AC8
B
134 145Right-handed 310
Helix 27
AC9
B
156 181Right-handed alpha
Helix 28
AD1
B
191 195Right-handed 310
Helix 29
AD2
B
202 210Right-handed 310
Helix 30
AD3
B
211 231Right-handed alpha
Helix 31
AD4
B
234 238Right-handed 310
Helix 32
AD5
B
239 259Right-handed alpha
Helix 33
AD6
B
265 288Right-handed alpha
Helix 34
AD7
B
301 312Right-handed alpha
Helix 35
AD8
B
313 316Right-handed 310
Helix 36
AD9
B
317 336Right-handed alpha
Helix 37
AE1
B
365 398Right-handed alpha
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There are 2 sheets in PDB entry 5JG4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 338first strand
Strand 2
A
351 352anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 338first strand
Strand 2
B
351 352anti-parallel
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