Analysis of interatomic Contacts of Structural Units in PDB entry:
5JG8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JG8 entry

There are 2 chains in PDB entry 5JG8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 83MET 611
B
 PHE 82MET 611
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 5JG8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 86Right-handed 310
Helix 2
AA2
A
87 104Right-handed alpha
Helix 3
AA3
A
105 124Right-handed alpha
Helix 4
AA4
A
127 149Right-handed alpha
Helix 5
AA5
A
155 161Right-handed alpha
Helix 6
AA6
A
253 263Right-handed alpha
Helix 7
AA7
A
288 308Right-handed alpha
Helix 8
AA8
A
338 345Right-handed alpha
Helix 9
AA9
A
354 364Right-handed alpha
Helix 10
AB1
A
381 386Right-handed 310
Helix 11
AB2
A
389 394Right-handed 310
Helix 12
AB3
A
398 400Right-handed 310
Helix 13
AB4
A
401 415Right-handed alpha
Helix 14
AB5
A
416 418Right-handed 310
Helix 15
AB6
A
433 446Right-handed alpha
Helix 16
AB7
A
520 525Right-handed alpha
Helix 17
AB8
A
538 544Right-handed alpha
Helix 18
AB9
A
549 563Right-handed alpha
Helix 19
AC1
A
563 575Right-handed alpha
Helix 20
AC2
A
585 598Right-handed alpha
Helix 21
AC3
A
603 608Right-handed 310
Helix 22
AC4
B
83 86Right-handed 310
Helix 23
AC5
B
87 104Right-handed alpha
Helix 24
AC6
B
105 124Right-handed alpha
Helix 25
AC7
B
127 149Right-handed alpha
Helix 26
AC8
B
155 161Right-handed alpha
Helix 27
AC9
B
253 263Right-handed alpha
Helix 28
AD1
B
288 308Right-handed alpha
Helix 29
AD2
B
338 345Right-handed alpha
Helix 30
AD3
B
354 364Right-handed alpha
Helix 31
AD4
B
381 386Right-handed 310
Helix 32
AD5
B
389 394Right-handed 310
Helix 33
AD6
B
398 400Right-handed 310
Helix 34
AD7
B
401 417Right-handed alpha
Helix 35
AD8
B
433 446Right-handed alpha
Helix 36
AD9
B
520 525Right-handed alpha
Helix 37
AE1
B
538 544Right-handed alpha
Helix 38
AE2
B
549 563Right-handed alpha
Helix 39
AE3
B
563 575Right-handed alpha
Helix 40
AE4
B
585 598Right-handed alpha
Helix 41
AE5
B
603 611Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5JG8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
272 275parallel
Strand 3
A
198 204parallel
Strand 4
A
494 501anti-parallel
Strand 5
A
511 519anti-parallel
Strand 6
A
533 534anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 369first strand
Strand 2
A
375 379anti-parallel
Strand 3
A
419 424parallel
Strand 4
A
450 459parallel
Strand 5
A
475 483parallel
Strand 6
A
462 467anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 314first strand
Strand 2
B
272 275parallel
Strand 3
B
198 204parallel
Strand 4
B
494 501anti-parallel
Strand 5
B
511 519anti-parallel
Strand 6
B
533 534anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
367 369first strand
Strand 2
B
375 379anti-parallel
Strand 3
B
419 424parallel
Strand 4
B
450 459parallel
Strand 5
B
475 483parallel
Strand 6
B
462 467anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il