Analysis of interatomic Contacts of Structural Units in PDB entry:
5JGF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JGF entry

There are 4 chains in PDB entry 5JGF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 47	PHE 511
B	HIS 47	PHE 511
C	HIS 47	PHE 511
D	HIS 47	PHE 511

There are 71 helices in PDB entry 5JGF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	63	Right-handed alpha
Helix 2	AA2	A	65	80	Right-handed alpha
Helix 3	AA3	A	121	125	Right-handed 310
Helix 4	AA4	A	165	169	Right-handed 310
Helix 5	AA5	A	208	216	Right-handed 310
Helix 6	AA6	A	245	249	Right-handed 310
Helix 7	AA7	A	256	268	Right-handed alpha
Helix 8	AA8	A	270	272	Right-handed 310
Helix 9	AA9	A	301	320	Right-handed alpha
Helix 10	AB1	A	338	342	Right-handed 310
Helix 11	AB2	A	348	351	Right-handed 310
Helix 12	AB3	A	352	366	Right-handed alpha
Helix 13	AB4	A	371	378	Right-handed alpha
Helix 14	AB5	A	394	398	Right-handed 310
Helix 15	AB6	A	423	438	Right-handed alpha
Helix 16	AB7	A	456	465	Right-handed alpha
Helix 17	AB8	A	488	509	Right-handed alpha
Helix 18	AB9	B	48	63	Right-handed alpha
Helix 19	AC1	B	65	80	Right-handed alpha
Helix 20	AC2	B	121	125	Right-handed 310
Helix 21	AC3	B	165	169	Right-handed 310
Helix 22	AC4	B	208	216	Right-handed 310
Helix 23	AC5	B	245	249	Right-handed 310
Helix 24	AC6	B	256	268	Right-handed alpha
Helix 25	AC7	B	270	272	Right-handed 310
Helix 26	AC8	B	301	321	Right-handed alpha
Helix 27	AC9	B	322	327	Right-handed 310
Helix 28	AD1	B	338	342	Right-handed 310
Helix 29	AD2	B	348	351	Right-handed 310
Helix 30	AD3	B	352	366	Right-handed alpha
Helix 31	AD4	B	371	378	Right-handed alpha
Helix 32	AD5	B	394	398	Right-handed 310
Helix 33	AD6	B	423	438	Right-handed alpha
Helix 34	AD7	B	456	465	Right-handed alpha
Helix 35	AD8	B	488	510	Right-handed alpha
Helix 36	AD9	C	48	63	Right-handed alpha
Helix 37	AE1	C	65	80	Right-handed alpha
Helix 38	AE2	C	121	125	Right-handed 310
Helix 39	AE3	C	165	169	Right-handed 310
Helix 40	AE4	C	208	216	Right-handed 310
Helix 41	AE5	C	245	249	Right-handed 310
Helix 42	AE6	C	256	268	Right-handed alpha
Helix 43	AE7	C	270	272	Right-handed 310
Helix 44	AE8	C	301	320	Right-handed alpha
Helix 45	AE9	C	321	322	Right-handed 310
Helix 46	AF1	C	323	327	Right-handed 310
Helix 47	AF2	C	338	342	Right-handed 310
Helix 48	AF3	C	348	351	Right-handed 310
Helix 49	AF4	C	352	366	Right-handed alpha
Helix 50	AF5	C	371	378	Right-handed alpha
Helix 51	AF6	C	394	398	Right-handed 310
Helix 52	AF7	C	423	438	Right-handed alpha
Helix 53	AF8	C	456	465	Right-handed alpha
Helix 54	AF9	C	488	510	Right-handed alpha
Helix 55	AG1	D	48	63	Right-handed alpha
Helix 56	AG2	D	65	80	Right-handed alpha
Helix 57	AG3	D	121	125	Right-handed 310
Helix 58	AG4	D	165	169	Right-handed 310
Helix 59	AG5	D	208	216	Right-handed 310
Helix 60	AG6	D	245	249	Right-handed 310
Helix 61	AG7	D	256	268	Right-handed alpha
Helix 62	AG8	D	270	272	Right-handed 310
Helix 63	AG9	D	301	320	Right-handed alpha
Helix 64	AH1	D	338	342	Right-handed 310
Helix 65	AH2	D	348	351	Right-handed 310
Helix 66	AH3	D	352	366	Right-handed alpha
Helix 67	AH4	D	371	378	Right-handed alpha
Helix 68	AH5	D	394	398	Right-handed 310
Helix 69	AH6	D	423	438	Right-handed alpha
Helix 70	AH7	D	456	465	Right-handed alpha
Helix 71	AH8	D	488	510	Right-handed alpha

There are 20 sheets in PDB entry 5JGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	100	106	parallel
Strand 3	A	110	116	anti-parallel
Strand 4	A	330	336	anti-parallel
Strand 5	A	127	132	parallel
Strand 6	A	380	384	parallel
Strand 7	A	467	472	parallel
Strand 8	A	411	413	anti-parallel
Strand 9	A	442	444	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	160	first strand
Strand 2	A	137	140	anti-parallel
Strand 3	A	274	283	anti-parallel
Strand 4	A	173	181	anti-parallel
Strand 5	A	190	195	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	228	230	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	290	first strand
Strand 2	A	296	299	anti-parallel
Strand 3	A	483	486	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	A	474	475	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	100	106	parallel
Strand 3	B	110	116	anti-parallel
Strand 4	B	330	336	anti-parallel
Strand 5	B	127	132	parallel
Strand 6	B	380	384	parallel
Strand 7	B	467	472	parallel
Strand 8	B	411	413	anti-parallel
Strand 9	B	442	444	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	160	first strand
Strand 2	B	137	140	anti-parallel
Strand 3	B	274	283	anti-parallel
Strand 4	B	173	182	anti-parallel
Strand 5	B	189	195	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	228	230	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	290	first strand
Strand 2	B	296	299	anti-parallel
Strand 3	B	483	486	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	388	first strand
Strand 2	B	474	475	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	99	106	parallel
Strand 3	C	110	117	anti-parallel
Strand 4	C	330	336	anti-parallel
Strand 5	C	127	132	parallel
Strand 6	C	380	384	parallel
Strand 7	C	467	472	parallel
Strand 8	C	410	413	anti-parallel
Strand 9	C	441	444	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	160	first strand
Strand 2	C	137	140	anti-parallel
Strand 3	C	274	283	anti-parallel
Strand 4	C	173	181	anti-parallel
Strand 5	C	190	195	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	228	230	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	290	first strand
Strand 2	C	296	299	anti-parallel
Strand 3	C	483	486	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	388	first strand
Strand 2	C	474	475	parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	84	first strand
Strand 2	D	99	106	parallel
Strand 3	D	110	117	anti-parallel
Strand 4	D	330	336	anti-parallel
Strand 5	D	127	132	parallel
Strand 6	D	380	384	parallel
Strand 7	D	467	472	parallel
Strand 8	D	410	413	anti-parallel
Strand 9	D	441	444	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	160	first strand
Strand 2	D	137	140	anti-parallel
Strand 3	D	274	283	anti-parallel
Strand 4	D	173	181	anti-parallel
Strand 5	D	190	195	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	228	230	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	290	first strand
Strand 2	D	296	299	anti-parallel
Strand 3	D	483	486	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	388	first strand
Strand 2	D	474	475	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JGF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JGF