Analysis of interatomic Contacts of Structural Units in PDB entry:
5JGL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JGL entry

There are 2 chains in PDB entry 5JGL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 14PRO 287
B
 PHE 16PRO 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 5JGL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 18Right-handed 310
Helix 2
AA2
A
19 24Right-handed alpha
Helix 3
AA3
A
26 29Right-handed 310
Helix 4
AA4
A
30 39Right-handed alpha
Helix 5
AA5
A
58 68Right-handed alpha
Helix 6
AA6
A
69 75Right-handed alpha
Helix 7
AA7
A
84 98Right-handed alpha
Helix 8
AA8
A
134 145Right-handed alpha
Helix 9
AA9
A
162 171Right-handed alpha
Helix 10
AB1
A
181 187Right-handed alpha
Helix 11
AB2
A
195 207Right-handed alpha
Helix 12
AB3
A
224 243Right-handed alpha
Helix 13
AB4
A
244 252Right-handed alpha
Helix 14
AB5
A
254 268Right-handed alpha
Helix 15
AB6
B
23 28Right-handed alpha
Helix 16
AB7
B
30 39Right-handed alpha
Helix 17
AB8
B
58 68Right-handed alpha
Helix 18
AB9
B
69 76Right-handed alpha
Helix 19
AC1
B
84 99Right-handed alpha
Helix 20
AC2
B
128 132Right-handed 310
Helix 21
AC3
B
134 145Right-handed alpha
Helix 22
AC4
B
162 172Right-handed alpha
Helix 23
AC5
B
181 190Right-handed alpha
Helix 24
AC6
B
195 207Right-handed alpha
Helix 25
AC7
B
223 239Right-handed alpha
Helix 26
AC8
B
240 242Right-handed 310
Helix 27
AC9
B
244 252Right-handed alpha
Helix 28
AD1
B
254 267Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5JGL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
77 82parallel
Strand 3
A
49 53parallel
Strand 4
A
120 126parallel
Strand 5
A
146 160parallel
Strand 6
A
272 285anti-parallel
Strand 7
A
209 223anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 107first strand
Strand 2
B
77 82parallel
Strand 3
B
49 53parallel
Strand 4
B
120 126parallel
Strand 5
B
146 160parallel
Strand 6
B
273 285anti-parallel
Strand 7
B
209 222anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il