Analysis of interatomic Contacts of Structural Units in PDB entry:
5JH5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JH5 entry

There are 4 chains in PDB entry 5JH5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1065LEU 1335
B
 PRO 2TRP 159
C
 HIS 157LYS 255
D
 ASP 1594CYS 1709
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5JH5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1066 1075Right-handed alpha
Helix 2
AA2
A
1078 1087Right-handed alpha
Helix 3
AA3
A
1091 1096Right-handed alpha
Helix 4
AA4
A
1098 1102Right-handed 310
Helix 5
AA5
A
1114 1125Right-handed alpha
Helix 6
AA6
A
1137 1148Right-handed alpha
Helix 7
AA7
A
1160 1165Right-handed alpha
Helix 8
AA8
A
1166 1169Right-handed 310
Helix 9
AA9
A
1187 1196Right-handed alpha
Helix 10
AB1
A
1226 1237Right-handed alpha
Helix 11
AB2
A
1252 1260Right-handed alpha
Helix 12
AB3
A
1264 1270Right-handed alpha
Helix 13
AB4
A
1283 1290Right-handed alpha
Helix 14
AB5
A
1307 1319Right-handed alpha
Helix 15
AB6
B
18 22Right-handed alpha
Helix 16
AB7
B
24 34Right-handed alpha
Helix 17
AB8
B
51 65Right-handed alpha
Helix 18
AB9
B
86 93Right-handed alpha
Helix 19
AC1
B
96 111Right-handed alpha
Helix 20
AC2
B
112 126Right-handed alpha
Helix 21
AC3
B
131 140Right-handed alpha
Helix 22
AC4
B
146 157Right-handed alpha
Helix 23
AC5
C
162 166Right-handed 310
Helix 24
AC6
C
199 212Right-handed alpha
Helix 25
AC7
C
214 216Right-handed 310
Helix 26
AC8
C
232 241Right-handed alpha
Helix 27
AC9
D
1625 1633Right-handed alpha
Helix 28
AD1
D
1635 1643Right-handed alpha
Helix 29
AD2
D
1653 1662Right-handed alpha
Helix 30
AD3
D
1693 1700Right-handed alpha
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There are 4 sheets in PDB entry 5JH5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1104 1106first strand
Strand 2
A
1128 1130parallel
Strand 3
A
1153 1155parallel
Strand 4
A
1177 1179parallel
Strand 5
A
1217 1219parallel
Strand 6
A
1242 1244parallel
Strand 7
A
1272 1274parallel
Strand 8
A
1297 1299parallel
Strand 9
A
1331 1334anti-parallel
Strand 10
A
1324 1325anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
3 7anti-parallel
Strand 3
B
45 46parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
225 226first strand
Strand 2
C
218 222anti-parallel
Strand 3
C
248 254anti-parallel
Strand 4
C
168 175parallel
Strand 5
C
190 195anti-parallel
Strand 6
D
1596 1601anti-parallel
Strand 7
D
1703 1707anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1608 1611first strand
Strand 2
D
1620 1624anti-parallel
Strand 3
D
1686 1691anti-parallel
Strand 4
D
1648 1652anti-parallel
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