Analysis of interatomic Contacts of Structural Units in PDB entry:
5JH8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JH8 entry

There are 9 chains in PDB entry 5JH8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1ARG 57
A
 ILE 59VAL 95
A
 PHE 97ASP 100
A
 ARG 102LEU 137
A
 LEU 139ALA 148
A
 ASP 150TRP 221
A
 ARG 223TRP 232
A
 ASP 234VAL 308
A
 GLN 310ARG 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5JH8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 19Right-handed alpha
Helix 2
AA2
A
47 58Right-handed alpha
Helix 3
AA3
A
75 84Right-handed alpha
Helix 4
AA4
A
86 102Right-handed alpha
Helix 5
AA5
A
114 116Right-handed 310
Helix 6
AA6
A
117 134Right-handed alpha
Helix 7
AA7
A
147 151Right-handed 310
Helix 8
AA8
A
160 168Right-handed alpha
Helix 9
AA9
A
190 205Right-handed alpha
Helix 10
AB1
A
206 208Right-handed 310
Helix 11
AB2
A
234 243Right-handed alpha
Helix 12
AB3
A
273 288Right-handed alpha
Helix 13
AB4
A
301 313Right-handed alpha
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There are 2 sheets in PDB entry 5JH8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
25 33anti-parallel
Strand 3
A
61 66parallel
Strand 4
A
105 109parallel
Strand 5
A
138 144parallel
Strand 6
A
170 174parallel
Strand 7
A
210 215parallel
Strand 8
A
291 295parallel
Strand 9
A
1 6parallel
Strand 10
A
25 33parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 231first strand
Strand 2
A
217 223anti-parallel
Strand 3
A
266 271anti-parallel
Strand 4
A
254 260anti-parallel
Strand 5
A
247 249anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il