Analysis of interatomic Contacts of Structural Units in PDB entry:
5JH9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JH9 entry

There are 3 chains in PDB entry 5JH9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 33	GLY 512
B	GLU 31	GLY 512
C	LYS 35	LEU 389

There are 76 helices in PDB entry 5JH9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	44	Right-handed alpha
Helix 2	AA2	A	48	63	Right-handed alpha
Helix 3	AA3	A	65	80	Right-handed alpha
Helix 4	AA4	A	121	125	Right-handed 310
Helix 5	AA5	A	165	169	Right-handed 310
Helix 6	AA6	A	208	216	Right-handed 310
Helix 7	AA7	A	243	248	Right-handed alpha
Helix 8	AA8	A	256	268	Right-handed alpha
Helix 9	AA9	A	270	272	Right-handed 310
Helix 10	AB1	A	301	321	Right-handed alpha
Helix 11	AB2	A	338	342	Right-handed 310
Helix 12	AB3	A	348	351	Right-handed 310
Helix 13	AB4	A	352	367	Right-handed alpha
Helix 14	AB5	A	371	378	Right-handed alpha
Helix 15	AB6	A	394	398	Right-handed 310
Helix 16	AB7	A	423	438	Right-handed alpha
Helix 17	AB8	A	456	465	Right-handed alpha
Helix 18	AB9	A	488	509	Right-handed alpha
Helix 19	AC1	A	510	512	Right-handed 310
Helix 20	AC2	B	32	43	Right-handed alpha
Helix 21	AC3	B	49	63	Right-handed alpha
Helix 22	AC4	B	65	80	Right-handed alpha
Helix 23	AC5	B	121	125	Right-handed 310
Helix 24	AC6	B	165	169	Right-handed 310
Helix 25	AC7	B	208	216	Right-handed 310
Helix 26	AC8	B	245	249	Right-handed 310
Helix 27	AC9	B	256	268	Right-handed alpha
Helix 28	AD1	B	270	272	Right-handed 310
Helix 29	AD2	B	301	321	Right-handed alpha
Helix 30	AD3	B	348	351	Right-handed 310
Helix 31	AD4	B	352	367	Right-handed alpha
Helix 32	AD5	B	371	378	Right-handed alpha
Helix 33	AD6	B	394	398	Right-handed 310
Helix 34	AD7	B	423	438	Right-handed alpha
Helix 35	AD8	B	456	465	Right-handed alpha
Helix 36	AD9	B	488	509	Right-handed alpha
Helix 37	AE1	B	510	512	Right-handed 310
Helix 38	AE2	C	36	44	Right-handed alpha
Helix 39	AE3	C	49	63	Right-handed alpha
Helix 40	AE4	C	65	80	Right-handed alpha
Helix 41	AE5	C	121	125	Right-handed 310
Helix 42	AE6	C	165	169	Right-handed 310
Helix 43	AE7	C	208	216	Right-handed 310
Helix 44	AE8	C	243	248	Right-handed alpha
Helix 45	AE9	C	256	268	Right-handed alpha
Helix 46	AF1	C	270	272	Right-handed 310
Helix 47	AF2	C	301	321	Right-handed alpha
Helix 48	AF3	C	322	327	Right-handed 310
Helix 49	AF4	C	338	342	Right-handed 310
Helix 50	AF5	C	348	351	Right-handed 310
Helix 51	AF6	C	352	367	Right-handed alpha
Helix 52	AF7	C	371	378	Right-handed alpha
Helix 53	AF8	C	394	398	Right-handed 310
Helix 54	AF9	C	423	438	Right-handed alpha
Helix 55	AG1	C	456	465	Right-handed alpha
Helix 56	AG2	C	488	509	Right-handed alpha
Helix 57	AG3	C	510	512	Right-handed 310
Helix 58	AG4	D	36	43	Right-handed alpha
Helix 59	AG5	D	48	63	Right-handed alpha
Helix 60	AG6	D	65	80	Right-handed alpha
Helix 61	AG7	D	90	94	Right-handed 310
Helix 62	AG8	D	121	125	Right-handed 310
Helix 63	AG9	D	165	169	Right-handed 310
Helix 64	AH1	D	208	216	Right-handed 310
Helix 65	AH2	D	245	249	Right-handed 310
Helix 66	AH3	D	256	268	Right-handed alpha
Helix 67	AH4	D	270	272	Right-handed 310
Helix 68	AH5	D	301	320	Right-handed alpha
Helix 69	AH6	D	338	342	Right-handed 310
Helix 70	AH7	D	348	351	Right-handed 310
Helix 71	AH8	D	352	367	Right-handed alpha
Helix 72	AH9	D	371	378	Right-handed alpha
Helix 73	AI1	D	394	398	Right-handed 310
Helix 74	AI2	D	423	438	Right-handed alpha
Helix 75	AI3	D	456	465	Right-handed alpha
Helix 76	AI4	D	488	510	Right-handed alpha

There are 18 sheets in PDB entry 5JH9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	100	106	parallel
Strand 3	A	110	116	anti-parallel
Strand 4	A	330	336	anti-parallel
Strand 5	A	127	132	parallel
Strand 6	A	380	384	parallel
Strand 7	A	467	472	parallel
Strand 8	A	410	413	anti-parallel
Strand 9	A	441	444	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	195	first strand
Strand 2	A	173	181	anti-parallel
Strand 3	A	274	283	anti-parallel
Strand 4	A	137	145	anti-parallel
Strand 5	A	153	160	anti-parallel
Strand 6	A	228	230	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	290	first strand
Strand 2	A	296	299	anti-parallel
Strand 3	A	483	486	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	A	474	475	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	100	106	parallel
Strand 3	B	110	116	anti-parallel
Strand 4	B	330	336	anti-parallel
Strand 5	B	127	132	parallel
Strand 6	B	380	384	parallel
Strand 7	B	467	472	parallel
Strand 8	B	410	413	anti-parallel
Strand 9	B	441	444	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	195	first strand
Strand 2	B	173	182	anti-parallel
Strand 3	B	274	283	anti-parallel
Strand 4	B	137	145	anti-parallel
Strand 5	B	153	160	anti-parallel
Strand 6	B	228	230	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	290	first strand
Strand 2	B	296	299	anti-parallel
Strand 3	B	483	486	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	388	first strand
Strand 2	B	474	475	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	100	106	parallel
Strand 3	C	110	116	anti-parallel
Strand 4	C	330	336	anti-parallel
Strand 5	C	127	132	parallel
Strand 6	C	380	384	parallel
Strand 7	C	467	472	parallel
Strand 8	C	410	413	anti-parallel
Strand 9	C	441	444	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	160	first strand
Strand 2	C	137	140	anti-parallel
Strand 3	C	274	283	anti-parallel
Strand 4	C	173	182	anti-parallel
Strand 5	C	189	195	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	228	230	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	290	first strand
Strand 2	C	296	299	anti-parallel
Strand 3	C	483	486	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	388	first strand
Strand 2	C	474	475	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	84	first strand
Strand 2	D	100	106	parallel
Strand 3	D	110	116	anti-parallel
Strand 4	D	330	336	anti-parallel
Strand 5	D	127	132	parallel
Strand 6	D	380	384	parallel
Strand 7	D	467	472	parallel
Strand 8	D	410	413	anti-parallel
Strand 9	D	441	444	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	160	first strand
Strand 2	D	137	140	anti-parallel
Strand 3	D	274	283	anti-parallel
Strand 4	D	173	182	anti-parallel
Strand 5	D	189	195	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	228	230	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	290	first strand
Strand 2	D	296	299	anti-parallel
Strand 3	D	483	486	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	388	first strand
Strand 2	D	474	475	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JH9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JH9