Analysis of interatomic Contacts of Structural Units in PDB entry:
5JHB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JHB entry

There is 1 chain in PDB entry 5JHB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 144VAL 1091
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5JHB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
144 159Right-handed alpha
Helix 2
AA2
A
171 180Right-handed alpha
Helix 3
AA3
A
181 189Right-handed alpha
Helix 4
AA4
A
192 199Right-handed alpha
Helix 5
AA5
A
209 214Right-handed alpha
Helix 6
AA6
A
240 251Right-handed alpha
Helix 7
AA7
A
286 289Right-handed 310
Helix 8
AA8
A
290 299Right-handed alpha
Helix 9
AA9
A
312 317Right-handed 310
Helix 10
AB1
A
498 503Right-handed 310
Helix 11
AB2
A
548 561Right-handed alpha
Helix 12
AB3
A
568 578Right-handed alpha
Helix 13
AB4
A
578 583Right-handed alpha
Helix 14
AB5
A
584 587Right-handed 310
Helix 15
AB6
A
588 595Right-handed alpha
Helix 16
AB7
A
600 611Right-handed alpha
Helix 17
AB8
A
614 620Right-handed alpha
Helix 18
AB9
A
623 630Right-handed alpha
Helix 19
AC1
A
637 649Right-handed alpha
Helix 20
AC2
A
652 667Right-handed alpha
Helix 21
AC3
A
668 670Right-handed 310
Helix 22
AC4
A
675 688Right-handed alpha
Helix 23
AC5
A
688 706Right-handed alpha
Helix 24
AC6
A
709 725Right-handed alpha
Helix 25
AC7
A
725 752Right-handed alpha
Helix 26
AC8
A
761 775Right-handed alpha
Helix 27
AC9
A
837 858Right-handed alpha
Helix 28
AD1
A
888 893Right-handed alpha
Helix 29
AD2
A
905 915Right-handed alpha
Helix 30
AD3
A
917 943Right-handed alpha
Helix 31
AD4
A
948 950Right-handed 310
Helix 32
AD5
A
988 995Right-handed alpha
Helix 33
AD6
A
1003 1022Right-handed alpha
Helix 34
AD7
A
1023 1039Right-handed alpha
Helix 35
AD8
A
1044 1048Right-handed alpha
Helix 36
AD9
A
1048 1055Right-handed alpha
Helix 37
AE1
A
1060 1078Right-handed alpha
Helix 38
AE2
A
1080 1090Right-handed alpha
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There are 7 sheets in PDB entry 5JHB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
220 225anti-parallel
Strand 3
A
234 235anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
220 225anti-parallel
Strand 3
A
303 308parallel
Strand 4
A
271 274anti-parallel
Strand 5
A
280 281anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 365first strand
Strand 2
A
412 419anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 398first strand
Strand 2
A
382 389anti-parallel
Strand 3
A
428 434anti-parallel
Strand 4
A
462 464anti-parallel
Strand 5
A
478 486anti-parallel
Strand 6
A
514 520anti-parallel
Strand 7
A
367 369anti-parallel
Strand 8
A
407 408anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
783 785first strand
Strand 2
A
788 796anti-parallel
Strand 3
A
811 817anti-parallel
Strand 4
A
802 803anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
783 785first strand
Strand 2
A
788 796anti-parallel
Strand 3
A
811 817anti-parallel
Strand 4
A
828 833anti-parallel
Strand 5
A
876 880anti-parallel
Strand 6
A
869 873anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
885 887first strand
Strand 2
A
952 955anti-parallel
Strand 3
A
960 962anti-parallel
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