Analysis of interatomic Contacts of Structural Units in PDB entry:
5JHE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JHE entry

There is 1 chain in PDB entry 5JHE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -3LYS 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 5JHE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 43Right-handed alpha
Helix 2
AA2
A
99 106Right-handed alpha
Helix 3
AA3
A
151 155Right-handed 310
Helix 4
AA4
A
167 176Right-handed alpha
Helix 5
AA5
A
198 202Right-handed 310
Helix 6
AA6
A
212 216Right-handed 310
Helix 7
AA7
A
221 225Right-handed 310
Helix 8
AA8
A
232 253Right-handed alpha
Helix 9
AA9
A
255 274Right-handed alpha
Helix 10
AB1
A
280 305Right-handed alpha
Helix 11
AB2
A
307 320Right-handed alpha
Helix 12
AB3
A
325 343Right-handed alpha
Helix 13
AB4
A
345 360Right-handed alpha
Helix 14
AB5
A
365 386Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5JHE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
70 73anti-parallel
Strand 3
A
144 147anti-parallel
Strand 4
A
128 131anti-parallel
Strand 5
A
160 166anti-parallel
Strand 6
A
16 25anti-parallel
Strand 7
A
6 13anti-parallel
Strand 8
A
189 196anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
54 55anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
111 112parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il