Analysis of interatomic Contacts of Structural Units in PDB entry:
5JHF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JHF entry

There are 10 chains in PDB entry 5JHF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 82
B
 VAL 9HIS 146
C
 MET 1VAL 413
D
 MET 1GLU 82
E
 VAL 9HIS 146
F
 MET 1VAL 413
G
 SER 395ARG 402
H
 SER 396LEU 401
I
 PRO 327SER 335
J
 PRO 327SER 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5JHF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 44Right-handed alpha
Helix 2
AA2
A
52 59Right-handed alpha
Helix 3
AA3
A
62 82Right-handed alpha
Helix 4
AA4
B
22 28Right-handed alpha
Helix 5
AA5
B
35 41Right-handed alpha
Helix 6
AA6
B
116 122Right-handed 310
Helix 7
AA7
B
123 144Right-handed alpha
Helix 8
AA8
C
2 65Right-handed alpha
Helix 9
AA9
C
86 108Right-handed alpha
Helix 10
AB1
C
120 125Right-handed 310
Helix 11
AB2
C
128 130Right-handed 310
Helix 12
AB3
C
131 163Right-handed alpha
Helix 13
AB4
C
168 173Right-handed alpha
Helix 14
AB5
C
190 226Right-handed alpha
Helix 15
AB6
C
229 384Right-handed alpha
Helix 16
AB7
C
389 393Right-handed 310
Helix 17
AB8
C
395 399Right-handed 310
Helix 18
AB9
D
29 45Right-handed alpha
Helix 19
AC1
D
51 59Right-handed alpha
Helix 20
AC2
D
62 82Right-handed alpha
Helix 21
AC3
E
22 27Right-handed alpha
Helix 22
AC4
E
36 41Right-handed alpha
Helix 23
AC5
E
116 122Right-handed 310
Helix 24
AC6
E
123 144Right-handed alpha
Helix 25
AC7
F
4 65Right-handed alpha
Helix 26
AC8
F
86 108Right-handed alpha
Helix 27
AC9
F
120 124Right-handed 310
Helix 28
AD1
F
128 130Right-handed 310
Helix 29
AD2
F
131 163Right-handed alpha
Helix 30
AD3
F
168 178Right-handed alpha
Helix 31
AD4
F
189 226Right-handed alpha
Helix 32
AD5
F
232 384Right-handed alpha
Helix 33
AD6
F
389 393Right-handed 310
Helix 34
AD7
F
395 399Right-handed 310
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There are 5 sheets in PDB entry 5JHF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 54first strand
Strand 2
A
6 13parallel
Strand 3
B
70 76parallel
Strand 4
B
82 88anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
14 19anti-parallel
Strand 3
B
104 111parallel
Strand 4
B
92 100anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
404 410first strand
Strand 2
F
404 410anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
48 54first strand
Strand 2
D
6 13parallel
Strand 3
E
70 76parallel
Strand 4
E
82 88anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 46first strand
Strand 2
E
14 19anti-parallel
Strand 3
E
104 111parallel
Strand 4
E
92 100anti-parallel
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