Analysis of interatomic Contacts of Structural Units in PDB entry:
5JHH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JHH entry

There are 4 chains in PDB entry 5JHH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 714ALA 1081
B
 ALA 3GLN 180
E
 GLN 714ALA 1081
F
 ALA 3GLN 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5JHH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
729 760Right-handed alpha
Helix 2
AA2
A
760 767Right-handed alpha
Helix 3
AA3
A
771 779Right-handed alpha
Helix 4
AA4
A
781 802Right-handed alpha
Helix 5
AA5
A
809 818Right-handed alpha
Helix 6
AA6
A
818 834Right-handed alpha
Helix 7
AA7
A
835 850Right-handed alpha
Helix 8
AA8
A
850 863Right-handed alpha
Helix 9
AA9
A
864 867Right-handed 310
Helix 10
AB1
A
870 875Right-handed alpha
Helix 11
AB2
A
876 895Right-handed alpha
Helix 12
AB3
A
900 939Right-handed alpha
Helix 13
AB4
A
950 957Right-handed 310
Helix 14
AB5
A
960 964Right-handed 310
Helix 15
AB6
A
1063 1081Right-handed alpha
Helix 16
AB7
B
17 28Right-handed alpha
Helix 17
AB8
B
69 74Right-handed 310
Helix 18
AB9
B
88 98Right-handed alpha
Helix 19
AC1
B
98 107Right-handed alpha
Helix 20
AC2
B
118 122Right-handed 310
Helix 21
AC3
B
124 134Right-handed alpha
Helix 22
AC4
B
140 152Right-handed alpha
Helix 23
AC5
B
166 180Right-handed alpha
Helix 24
AC6
E
729 760Right-handed alpha
Helix 25
AC7
E
760 767Right-handed alpha
Helix 26
AC8
E
771 779Right-handed alpha
Helix 27
AC9
E
781 802Right-handed alpha
Helix 28
AD1
E
809 818Right-handed alpha
Helix 29
AD2
E
818 835Right-handed alpha
Helix 30
AD3
E
835 850Right-handed alpha
Helix 31
AD4
E
850 863Right-handed alpha
Helix 32
AD5
E
864 867Right-handed 310
Helix 33
AD6
E
870 875Right-handed alpha
Helix 34
AD7
E
876 895Right-handed alpha
Helix 35
AD8
E
900 939Right-handed alpha
Helix 36
AD9
E
942 946Right-handed 310
Helix 37
AE1
E
950 955Right-handed alpha
Helix 38
AE2
E
960 964Right-handed 310
Helix 39
AE3
E
1063 1080Right-handed alpha
Helix 40
AE4
F
17 28Right-handed alpha
Helix 41
AE5
F
69 74Right-handed 310
Helix 42
AE6
F
88 98Right-handed alpha
Helix 43
AE7
F
98 107Right-handed alpha
Helix 44
AE8
F
118 122Right-handed 310
Helix 45
AE9
F
124 133Right-handed alpha
Helix 46
AF1
F
140 151Right-handed alpha
Helix 47
AF2
F
166 180Right-handed alpha
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There are 6 sheets in PDB entry 5JHH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
940 941first strand
Strand 2
A
1002 1004parallel
Strand 3
A
992 999anti-parallel
Strand 4
A
1025 1027anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
940 941first strand
Strand 2
A
1002 1004parallel
Strand 3
A
992 999anti-parallel
Strand 4
A
981 989anti-parallel
Strand 5
A
966 975anti-parallel
Strand 6
A
1057 1060anti-parallel
Strand 7
A
1042 1047anti-parallel
Strand 8
A
1031 1035anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 48first strand
Strand 2
B
51 58anti-parallel
Strand 3
B
5 12parallel
Strand 4
B
79 85parallel
Strand 5
B
112 117parallel
Strand 6
B
155 158parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
940 941first strand
Strand 2
E
1002 1004parallel
Strand 3
E
992 999anti-parallel
Strand 4
E
1025 1027anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
940 941first strand
Strand 2
E
1002 1004parallel
Strand 3
E
992 999anti-parallel
Strand 4
E
980 989anti-parallel
Strand 5
E
966 977anti-parallel
Strand 6
E
1055 1060anti-parallel
Strand 7
E
1042 1047anti-parallel
Strand 8
E
1031 1035anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
42 48first strand
Strand 2
F
51 58anti-parallel
Strand 3
F
4 12parallel
Strand 4
F
79 85parallel
Strand 5
F
112 117parallel
Strand 6
F
155 158parallel
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