Analysis of interatomic Contacts of Structural Units in PDB entry:
5JHO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JHO entry

There are 2 chains in PDB entry 5JHO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 42PRO 344
B
 SER 43PRO 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5JHO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 52Right-handed alpha
Helix 2
AA2
A
95 98Right-handed 310
Helix 3
AA3
A
110 123Right-handed alpha
Helix 4
AA4
A
133 143Right-handed alpha
Helix 5
AA5
A
152 164Right-handed alpha
Helix 6
AA6
A
237 241Right-handed 310
Helix 7
AA7
A
296 311Right-handed alpha
Helix 8
AA8
A
313 323Right-handed alpha
Helix 9
AA9
A
325 340Right-handed alpha
Helix 10
AB1
B
44 52Right-handed alpha
Helix 11
AB2
B
110 123Right-handed alpha
Helix 12
AB3
B
133 143Right-handed alpha
Helix 13
AB4
B
152 164Right-handed alpha
Helix 14
AB5
B
296 311Right-handed alpha
Helix 15
AB6
B
313 323Right-handed alpha
Helix 16
AB7
B
325 340Right-handed alpha
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There are 5 sheets in PDB entry 5JHO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
90 94anti-parallel
Strand 3
A
80 86anti-parallel
Strand 4
A
63 72anti-parallel
Strand 5
A
246 255parallel
Strand 6
A
284 292parallel
Strand 7
A
262 272anti-parallel
Strand 8
A
124 129parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
90 94anti-parallel
Strand 3
A
80 86anti-parallel
Strand 4
A
167 168parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
B
341 343anti-parallel
Strand 3
A
341 343anti-parallel
Strand 4
B
108 109anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
90 94anti-parallel
Strand 3
B
80 86anti-parallel
Strand 4
B
63 71anti-parallel
Strand 5
B
246 254parallel
Strand 6
B
284 292parallel
Strand 7
B
262 272anti-parallel
Strand 8
B
124 129parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
90 94anti-parallel
Strand 3
B
80 86anti-parallel
Strand 4
B
167 168parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il