Analysis of interatomic Contacts of Structural Units in PDB entry:
5JI0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JI0 entry

There are 4 chains in PDB entry 5JI0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 227LEU 455
D
 GLY 205TYR 477
E
 SER 682SER 700
F
 LYS 688GLU 696
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5JI0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
231 241Right-handed alpha
Helix 2
AA2
A
263 285Right-handed alpha
Helix 3
AA3
A
293 317Right-handed alpha
Helix 4
AA4
A
334 340Right-handed alpha
Helix 5
AA5
A
342 353Right-handed alpha
Helix 6
AA6
A
353 361Right-handed alpha
Helix 7
AA7
A
363 376Right-handed alpha
Helix 8
AA8
A
385 408Right-handed alpha
Helix 9
AA9
A
413 420Right-handed alpha
Helix 10
AB1
A
421 443Right-handed alpha
Helix 11
AB2
A
450 455Right-handed alpha
Helix 12
AB3
D
207 226Right-handed alpha
Helix 13
AB4
D
229 238Right-handed alpha
Helix 14
AB5
D
251 259Right-handed alpha
Helix 15
AB6
D
276 302Right-handed alpha
Helix 16
AB7
D
305 309Right-handed 310
Helix 17
AB8
D
310 333Right-handed alpha
Helix 18
AB9
D
342 344Right-handed 310
Helix 19
AC1
D
350 355Right-handed alpha
Helix 20
AC2
D
364 376Right-handed alpha
Helix 21
AC3
D
380 393Right-handed alpha
Helix 22
AC4
D
402 425Right-handed alpha
Helix 23
AC5
D
430 460Right-handed alpha
Helix 24
AC6
D
466 474Right-handed alpha
Helix 25
AC7
E
684 686Right-handed 310
Helix 26
AC8
E
687 697Right-handed alpha
Helix 27
AC9
F
689 696Right-handed alpha
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There are 2 sheets in PDB entry 5JI0. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
331 333anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
247 249first strand
Strand 2
D
346 349parallel
Strand 3
D
338 341anti-parallel
Strand 4
D
334 335anti-parallel
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