Analysis of interatomic Contacts of Structural Units in PDB entry:
5JI3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JI3 entry

There are 6 chains in PDB entry 5JI3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 1	LYS 174
B	THR 1	LYS 174
C	THR 1	LYS 174
D	THR 1	LYS 174
E	MET 1	LEU 443
F	MET 1	LEU 443

There are 62 helices in PDB entry 5JI3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	67	Right-handed alpha
Helix 2	AA2	A	70	85	Right-handed alpha
Helix 3	AA3	A	85	90	Right-handed alpha
Helix 4	AA4	A	115	119	Right-handed 310
Helix 5	AA5	A	125	140	Right-handed alpha
Helix 6	AA6	A	143	159	Right-handed alpha
Helix 7	AA7	B	49	67	Right-handed alpha
Helix 8	AA8	B	70	85	Right-handed alpha
Helix 9	AA9	B	85	90	Right-handed alpha
Helix 10	AB1	B	115	119	Right-handed 310
Helix 11	AB2	B	125	140	Right-handed alpha
Helix 12	AB3	B	143	159	Right-handed alpha
Helix 13	AB4	C	49	67	Right-handed alpha
Helix 14	AB5	C	70	85	Right-handed alpha
Helix 15	AB6	C	85	90	Right-handed alpha
Helix 16	AB7	C	115	119	Right-handed 310
Helix 17	AB8	C	125	140	Right-handed alpha
Helix 18	AB9	C	143	159	Right-handed alpha
Helix 19	AC1	D	49	67	Right-handed alpha
Helix 20	AC2	D	70	85	Right-handed alpha
Helix 21	AC3	D	85	90	Right-handed alpha
Helix 22	AC4	D	115	119	Right-handed 310
Helix 23	AC5	D	125	140	Right-handed alpha
Helix 24	AC6	D	143	159	Right-handed alpha
Helix 25	AC7	E	5	15	Right-handed alpha
Helix 26	AC8	E	20	39	Right-handed alpha
Helix 27	AC9	E	41	48	Right-handed alpha
Helix 28	AD1	E	62	75	Right-handed alpha
Helix 29	AD2	E	84	88	Right-handed 310
Helix 30	AD3	E	97	136	Right-handed alpha
Helix 31	AD4	E	153	165	Right-handed alpha
Helix 32	AD5	E	220	234	Right-handed alpha
Helix 33	AD6	E	235	251	Right-handed alpha
Helix 34	AD7	E	257	262	Right-handed 310
Helix 35	AD8	E	269	287	Right-handed alpha
Helix 36	AD9	E	314	318	Right-handed 310
Helix 37	AE1	E	319	324	Right-handed alpha
Helix 38	AE2	E	336	346	Right-handed alpha
Helix 39	AE3	E	350	362	Right-handed alpha
Helix 40	AE4	E	369	387	Right-handed alpha
Helix 41	AE5	E	392	410	Right-handed alpha
Helix 42	AE6	E	421	435	Right-handed alpha
Helix 43	AE7	E	435	443	Right-handed alpha
Helix 44	AE8	F	5	14	Right-handed alpha
Helix 45	AE9	F	20	39	Right-handed alpha
Helix 46	AF1	F	41	48	Right-handed alpha
Helix 47	AF2	F	62	75	Right-handed alpha
Helix 48	AF3	F	84	88	Right-handed 310
Helix 49	AF4	F	97	121	Right-handed alpha
Helix 50	AF5	F	153	165	Right-handed alpha
Helix 51	AF6	F	226	234	Right-handed alpha
Helix 52	AF7	F	235	251	Right-handed alpha
Helix 53	AF8	F	257	262	Right-handed 310
Helix 54	AF9	F	269	287	Right-handed alpha
Helix 55	AG1	F	314	318	Right-handed 310
Helix 56	AG2	F	319	324	Right-handed alpha
Helix 57	AG3	F	336	346	Right-handed alpha
Helix 58	AG4	F	350	362	Right-handed alpha
Helix 59	AG5	F	369	387	Right-handed alpha
Helix 60	AG6	F	392	410	Right-handed alpha
Helix 61	AG7	F	421	435	Right-handed alpha
Helix 62	AG8	F	435	443	Right-handed alpha

There are 17 sheets in PDB entry 5JI3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	A	3	8	anti-parallel
Strand 3	A	11	17	anti-parallel
Strand 4	A	166	172	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	25	28	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	93	98	anti-parallel
Strand 4	A	103	107	anti-parallel
Strand 5	A	112	113	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	122	first strand
Strand 2	B	3	8	anti-parallel
Strand 3	B	11	17	anti-parallel
Strand 4	B	166	172	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	22	first strand
Strand 2	B	25	28	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	37	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	93	98	anti-parallel
Strand 4	B	103	107	anti-parallel
Strand 5	B	112	113	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	122	first strand
Strand 2	C	3	8	anti-parallel
Strand 3	C	11	17	anti-parallel
Strand 4	C	166	172	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	22	first strand
Strand 2	C	25	28	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	93	98	anti-parallel
Strand 4	C	103	106	anti-parallel
Strand 5	C	112	113	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	122	first strand
Strand 2	D	3	8	anti-parallel
Strand 3	D	11	17	anti-parallel
Strand 4	D	166	172	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	22	first strand
Strand 2	D	25	28	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	42	48	anti-parallel
Strand 3	D	93	98	anti-parallel
Strand 4	D	103	106	anti-parallel
Strand 5	D	112	113	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	82	first strand
Strand 2	E	252	256	parallel
Strand 3	E	303	308	parallel
Strand 4	E	53	56	parallel
Strand 5	E	328	331	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	289	292	first strand
Strand 2	E	295	298	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	82	first strand
Strand 2	F	252	256	parallel
Strand 3	F	303	308	parallel
Strand 4	F	53	56	parallel
Strand 5	F	328	331	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	289	292	first strand
Strand 2	F	295	298	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	365	368	first strand
Strand 2	F	417	420	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JI3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JI3