Analysis of interatomic Contacts of Structural Units in PDB entry:
5JIA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JIA entry

There are 16 chains in PDB entry 5JIA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 33	GLN 238
B	GLU 32	GLN 238
C	GLY 31	ALA 235
D	SER 29	GLN 238
E	GLY 31	VAL 237
F	SER 29	ALA 235
G	GLY 31	TRP 233
H	GLN 33	ALA 235
I	GLU 32	VAL 237
J	GLN 33	ARG 231
K	GLY 31	TRP 233
L	GLU 32	LYS 236
M	SER 29	LYS 236
N	GLY 31	TRP 233
O	GLY 31	GLU 232
P	GLU 34	VAL 237

There are 64 helices in PDB entry 5JIA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	43	Right-handed alpha
Helix 2	AA2	A	83	87	Right-handed 310
Helix 3	AA3	A	97	100	Right-handed 310
Helix 4	AA4	A	225	237	Right-handed alpha
Helix 5	AA5	B	33	43	Right-handed alpha
Helix 6	AA6	B	83	87	Right-handed 310
Helix 7	AA7	B	97	100	Right-handed 310
Helix 8	AA8	B	225	237	Right-handed alpha
Helix 9	AA9	C	32	43	Right-handed alpha
Helix 10	AB1	C	83	87	Right-handed 310
Helix 11	AB2	C	97	100	Right-handed 310
Helix 12	AB3	C	225	235	Right-handed alpha
Helix 13	AB4	D	30	43	Right-handed alpha
Helix 14	AB5	D	83	87	Right-handed 310
Helix 15	AB6	D	97	100	Right-handed 310
Helix 16	AB7	D	225	237	Right-handed alpha
Helix 17	AB8	E	32	43	Right-handed alpha
Helix 18	AB9	E	83	87	Right-handed 310
Helix 19	AC1	E	97	100	Right-handed 310
Helix 20	AC2	E	225	236	Right-handed alpha
Helix 21	AC3	F	30	43	Right-handed alpha
Helix 22	AC4	F	83	87	Right-handed 310
Helix 23	AC5	F	97	100	Right-handed 310
Helix 24	AC6	F	225	235	Right-handed alpha
Helix 25	AC7	G	32	43	Right-handed alpha
Helix 26	AC8	G	83	87	Right-handed 310
Helix 27	AC9	G	97	100	Right-handed 310
Helix 28	AD1	G	225	233	Right-handed alpha
Helix 29	AD2	H	34	43	Right-handed alpha
Helix 30	AD3	H	83	87	Right-handed 310
Helix 31	AD4	H	97	100	Right-handed 310
Helix 32	AD5	H	225	235	Right-handed alpha
Helix 33	AD6	I	33	43	Right-handed alpha
Helix 34	AD7	I	83	87	Right-handed 310
Helix 35	AD8	I	97	100	Right-handed 310
Helix 36	AD9	I	225	237	Right-handed alpha
Helix 37	AE1	J	34	43	Right-handed alpha
Helix 38	AE2	J	83	87	Right-handed 310
Helix 39	AE3	J	97	100	Right-handed 310
Helix 40	AE4	J	225	230	Right-handed alpha
Helix 41	AE5	K	32	43	Right-handed alpha
Helix 42	AE6	K	83	87	Right-handed 310
Helix 43	AE7	K	97	100	Right-handed 310
Helix 44	AE8	K	225	233	Right-handed alpha
Helix 45	AE9	L	33	43	Right-handed alpha
Helix 46	AF1	L	83	87	Right-handed 310
Helix 47	AF2	L	97	100	Right-handed 310
Helix 48	AF3	L	225	236	Right-handed alpha
Helix 49	AF4	M	30	43	Right-handed alpha
Helix 50	AF5	M	83	87	Right-handed 310
Helix 51	AF6	M	97	100	Right-handed 310
Helix 52	AF7	M	225	236	Right-handed alpha
Helix 53	AF8	N	32	43	Right-handed alpha
Helix 54	AF9	N	83	87	Right-handed 310
Helix 55	AG1	N	97	100	Right-handed 310
Helix 56	AG2	N	225	232	Right-handed alpha
Helix 57	AG3	O	32	43	Right-handed alpha
Helix 58	AG4	O	83	87	Right-handed 310
Helix 59	AG5	O	97	100	Right-handed 310
Helix 60	AG6	O	225	232	Right-handed alpha
Helix 61	AG7	P	35	43	Right-handed alpha
Helix 62	AG8	P	83	87	Right-handed 310
Helix 63	AG9	P	97	100	Right-handed 310
Helix 64	AH1	P	225	237	Right-handed alpha

There are 32 sheets in PDB entry 5JIA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	62	first strand
Strand 2	A	88	92	anti-parallel
Strand 3	A	201	206	anti-parallel
Strand 4	A	119	123	anti-parallel
Strand 5	A	139	143	anti-parallel
Strand 6	A	148	151	anti-parallel
Strand 7	A	157	158	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	74	77	anti-parallel
Strand 3	A	211	216	anti-parallel
Strand 4	A	102	112	anti-parallel
Strand 5	A	168	174	anti-parallel
Strand 6	A	179	184	anti-parallel
Strand 7	A	187	193	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	62	first strand
Strand 2	B	88	92	anti-parallel
Strand 3	B	201	206	anti-parallel
Strand 4	B	119	123	anti-parallel
Strand 5	B	139	143	anti-parallel
Strand 6	B	148	151	anti-parallel
Strand 7	B	157	158	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	69	first strand
Strand 2	B	74	77	anti-parallel
Strand 3	B	211	216	anti-parallel
Strand 4	B	102	112	anti-parallel
Strand 5	B	168	174	anti-parallel
Strand 6	B	179	184	anti-parallel
Strand 7	B	187	193	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	62	first strand
Strand 2	C	88	92	anti-parallel
Strand 3	C	201	206	anti-parallel
Strand 4	C	119	123	anti-parallel
Strand 5	C	139	143	anti-parallel
Strand 6	C	148	151	anti-parallel
Strand 7	C	157	158	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	69	first strand
Strand 2	C	74	77	anti-parallel
Strand 3	C	211	216	anti-parallel
Strand 4	C	102	112	anti-parallel
Strand 5	C	168	174	anti-parallel
Strand 6	C	179	184	anti-parallel
Strand 7	C	187	193	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	62	first strand
Strand 2	D	88	92	anti-parallel
Strand 3	D	200	206	anti-parallel
Strand 4	D	119	124	anti-parallel
Strand 5	D	139	143	anti-parallel
Strand 6	D	149	151	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	69	first strand
Strand 2	D	74	77	anti-parallel
Strand 3	D	211	216	anti-parallel
Strand 4	D	102	112	anti-parallel
Strand 5	D	168	174	anti-parallel
Strand 6	D	179	184	anti-parallel
Strand 7	D	187	193	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	62	first strand
Strand 2	E	88	92	anti-parallel
Strand 3	E	201	206	anti-parallel
Strand 4	E	119	123	anti-parallel
Strand 5	E	139	143	anti-parallel
Strand 6	E	148	151	anti-parallel
Strand 7	E	157	158	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	69	first strand
Strand 2	E	74	77	anti-parallel
Strand 3	E	211	216	anti-parallel
Strand 4	E	102	112	anti-parallel
Strand 5	E	168	174	anti-parallel
Strand 6	E	179	184	anti-parallel
Strand 7	E	187	193	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	62	first strand
Strand 2	F	88	92	anti-parallel
Strand 3	F	201	206	anti-parallel
Strand 4	F	119	123	anti-parallel
Strand 5	F	139	143	anti-parallel
Strand 6	F	148	151	anti-parallel
Strand 7	F	157	158	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	69	first strand
Strand 2	F	74	77	anti-parallel
Strand 3	F	211	216	anti-parallel
Strand 4	F	102	112	anti-parallel
Strand 5	F	168	174	anti-parallel
Strand 6	F	179	184	anti-parallel
Strand 7	F	187	193	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	62	first strand
Strand 2	G	88	92	anti-parallel
Strand 3	G	201	206	anti-parallel
Strand 4	G	119	123	anti-parallel
Strand 5	G	139	143	anti-parallel
Strand 6	G	149	151	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	69	first strand
Strand 2	G	74	77	anti-parallel
Strand 3	G	211	216	anti-parallel
Strand 4	G	102	112	anti-parallel
Strand 5	G	168	174	anti-parallel
Strand 6	G	179	184	anti-parallel
Strand 7	G	187	193	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	62	first strand
Strand 2	H	88	92	anti-parallel
Strand 3	H	201	206	anti-parallel
Strand 4	H	119	123	anti-parallel
Strand 5	H	139	143	anti-parallel
Strand 6	H	148	151	anti-parallel
Strand 7	H	157	158	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	69	first strand
Strand 2	H	74	77	anti-parallel
Strand 3	H	211	216	anti-parallel
Strand 4	H	102	112	anti-parallel
Strand 5	H	168	174	anti-parallel
Strand 6	H	179	184	anti-parallel
Strand 7	H	187	193	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	62	first strand
Strand 2	I	88	92	anti-parallel
Strand 3	I	201	206	anti-parallel
Strand 4	I	119	123	anti-parallel
Strand 5	I	139	143	anti-parallel
Strand 6	I	149	151	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	66	69	first strand
Strand 2	I	74	77	anti-parallel
Strand 3	I	211	216	anti-parallel
Strand 4	I	102	112	anti-parallel
Strand 5	I	168	174	anti-parallel
Strand 6	I	179	184	anti-parallel
Strand 7	I	187	193	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	62	first strand
Strand 2	J	88	92	anti-parallel
Strand 3	J	201	206	anti-parallel
Strand 4	J	119	123	anti-parallel
Strand 5	J	139	143	anti-parallel
Strand 6	J	149	151	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	66	69	first strand
Strand 2	J	74	77	anti-parallel
Strand 3	J	211	216	anti-parallel
Strand 4	J	102	112	anti-parallel
Strand 5	J	168	174	anti-parallel
Strand 6	J	179	184	anti-parallel
Strand 7	J	187	193	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	57	62	first strand
Strand 2	K	88	92	anti-parallel
Strand 3	K	201	206	anti-parallel
Strand 4	K	119	123	anti-parallel
Strand 5	K	139	143	anti-parallel
Strand 6	K	148	151	anti-parallel
Strand 7	K	157	158	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	66	69	first strand
Strand 2	K	74	77	anti-parallel
Strand 3	K	211	216	anti-parallel
Strand 4	K	102	112	anti-parallel
Strand 5	K	168	174	anti-parallel
Strand 6	K	179	184	anti-parallel
Strand 7	K	187	193	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	62	first strand
Strand 2	L	88	92	anti-parallel
Strand 3	L	201	206	anti-parallel
Strand 4	L	119	123	anti-parallel
Strand 5	L	139	143	anti-parallel
Strand 6	L	148	151	anti-parallel
Strand 7	L	157	158	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	66	69	first strand
Strand 2	L	74	77	anti-parallel
Strand 3	L	211	216	anti-parallel
Strand 4	L	102	112	anti-parallel
Strand 5	L	168	174	anti-parallel
Strand 6	L	179	184	anti-parallel
Strand 7	L	187	193	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	62	first strand
Strand 2	M	88	92	anti-parallel
Strand 3	M	200	206	anti-parallel
Strand 4	M	119	124	anti-parallel
Strand 5	M	139	143	anti-parallel
Strand 6	M	148	151	anti-parallel
Strand 7	M	157	158	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	66	69	first strand
Strand 2	M	74	77	anti-parallel
Strand 3	M	211	216	anti-parallel
Strand 4	M	102	112	anti-parallel
Strand 5	M	168	174	anti-parallel
Strand 6	M	179	184	anti-parallel
Strand 7	M	187	193	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	57	62	first strand
Strand 2	N	88	92	anti-parallel
Strand 3	N	201	206	anti-parallel
Strand 4	N	119	123	anti-parallel
Strand 5	N	139	143	anti-parallel
Strand 6	N	149	151	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	66	69	first strand
Strand 2	N	74	77	anti-parallel
Strand 3	N	211	216	anti-parallel
Strand 4	N	102	112	anti-parallel
Strand 5	N	168	174	anti-parallel
Strand 6	N	179	184	anti-parallel
Strand 7	N	187	193	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	57	62	first strand
Strand 2	O	88	92	anti-parallel
Strand 3	O	201	206	anti-parallel
Strand 4	O	119	123	anti-parallel
Strand 5	O	139	143	anti-parallel
Strand 6	O	148	151	anti-parallel
Strand 7	O	157	158	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	66	69	first strand
Strand 2	O	74	77	anti-parallel
Strand 3	O	211	216	anti-parallel
Strand 4	O	102	112	anti-parallel
Strand 5	O	168	174	anti-parallel
Strand 6	O	179	184	anti-parallel
Strand 7	O	187	193	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	57	62	first strand
Strand 2	P	88	92	anti-parallel
Strand 3	P	201	206	anti-parallel
Strand 4	P	119	123	anti-parallel
Strand 5	P	139	143	anti-parallel
Strand 6	P	148	151	anti-parallel
Strand 7	P	157	158	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	66	69	first strand
Strand 2	P	74	77	anti-parallel
Strand 3	P	211	216	anti-parallel
Strand 4	P	102	112	anti-parallel
Strand 5	P	168	174	anti-parallel
Strand 6	P	179	184	anti-parallel
Strand 7	P	187	193	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JIA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JIA