Analysis of interatomic Contacts of Structural Units in PDB entry:
5JIE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JIE entry

There are 5 chains in PDB entry 5JIE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ILE 8ALA 64
C
 TRP 9VAL 65
E
 PRO 2LEU 63
D
 ALA 7VAL 65
A
 ILE 8SER 66
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5JIE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
9 21Right-handed alpha
Helix 2
AA2
B
29 40Right-handed alpha
Helix 3
AA3
B
40 64Right-handed alpha
Helix 4
AA4
C
10 21Right-handed alpha
Helix 5
AA5
C
29 40Right-handed alpha
Helix 6
AA6
C
40 64Right-handed alpha
Helix 7
AA7
E
3 21Right-handed alpha
Helix 8
AA8
E
29 40Right-handed alpha
Helix 9
AA9
E
40 62Right-handed alpha
Helix 10
AB1
D
8 21Right-handed alpha
Helix 11
AB2
D
29 40Right-handed alpha
Helix 12
AB3
D
40 64Right-handed alpha
Helix 13
AB4
A
9 21Right-handed alpha
Helix 14
AB5
A
29 40Right-handed alpha
Helix 15
AB6
A
40 61Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5JIE.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
E
22 25parallel
Strand 3
A
22 25parallel
Strand 4
C
22 25parallel
Strand 5
D
22 25parallel
Strand 6
B
22 25parallel
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