Analysis of interatomic Contacts of Structural Units in PDB entry:
5JIF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JIF entry

There are 2 chains in PDB entry 5JIF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 24VAL 386
B
 PHE 24VAL 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5JIF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 54Right-handed 310
Helix 2
AA2
A
65 71Right-handed 310
Helix 3
AA3
A
81 88Right-handed alpha
Helix 4
AA4
A
122 141Right-handed alpha
Helix 5
AA5
A
190 194Right-handed 310
Helix 6
AA6
A
309 315Right-handed alpha
Helix 7
AA7
A
339 347Right-handed alpha
Helix 8
AA8
A
348 351Right-handed 310
Helix 9
AA9
B
44 54Right-handed 310
Helix 10
AB1
B
65 71Right-handed 310
Helix 11
AB2
B
81 88Right-handed alpha
Helix 12
AB3
B
122 142Right-handed alpha
Helix 13
AB4
B
309 315Right-handed alpha
Helix 14
AB5
B
339 347Right-handed alpha
Helix 15
AB6
B
348 351Right-handed 310
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There are 11 sheets in PDB entry 5JIF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
38 42parallel
Strand 3
A
100 104parallel
Strand 4
A
294 297parallel
Strand 5
A
320 323parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
144 151anti-parallel
Strand 3
A
281 288anti-parallel
Strand 4
A
207 216anti-parallel
Strand 5
A
254 262anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
197 202anti-parallel
Strand 3
A
265 270anti-parallel
Strand 4
A
229 234anti-parallel
Strand 5
A
239 244anti-parallel
Strand 6
B
239 244anti-parallel
Strand 7
B
229 234anti-parallel
Strand 8
B
265 270anti-parallel
Strand 9
B
197 202anti-parallel
Strand 10
B
154 155anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
181 183anti-parallel
Strand 3
A
276 278anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
174 176anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 362first strand
Strand 2
A
355 357anti-parallel
Strand 3
A
376 377anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
38 42parallel
Strand 3
B
100 104parallel
Strand 4
B
294 297parallel
Strand 5
B
320 323parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
144 151anti-parallel
Strand 3
B
281 288anti-parallel
Strand 4
B
207 216anti-parallel
Strand 5
B
254 262anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
181 183anti-parallel
Strand 3
B
276 278anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 169first strand
Strand 2
B
174 176anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 362first strand
Strand 2
B
355 357anti-parallel
Strand 3
B
376 377anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il