Analysis of interatomic Contacts of Structural Units in PDB entry:
5JIL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JIL entry

There is 1 chain in PDB entry 5JIL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 20ILE 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5JIL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 43Right-handed 310
Helix 2
AA2
A
61 65Right-handed 310
Helix 3
AA3
A
77 84Right-handed alpha
Helix 4
AA4
A
118 138Right-handed alpha
Helix 5
AA5
A
311 317Right-handed alpha
Helix 6
AA6
A
343 350Right-handed alpha
Helix 7
AA7
A
351 354Right-handed 310
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There are 6 sheets in PDB entry 5JIL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
34 38parallel
Strand 3
A
96 100parallel
Strand 4
A
296 299parallel
Strand 5
A
322 325parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
140 147anti-parallel
Strand 3
A
283 290anti-parallel
Strand 4
A
199 207anti-parallel
Strand 5
A
257 264anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
188 194anti-parallel
Strand 3
A
267 275anti-parallel
Strand 4
A
226 231anti-parallel
Strand 5
A
237 241anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
278 280anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 337first strand
Strand 2
A
340 342anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 365first strand
Strand 2
A
358 359anti-parallel
Strand 3
A
379 380anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il