Analysis of interatomic Contacts of Structural Units in PDB entry:
5JIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JIP entry

There are 2 chains in PDB entry 5JIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4ASN 320
B
 GLN 7ASN 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5JIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 35Right-handed alpha
Helix 2
AA2
A
55 67Right-handed alpha
Helix 3
AA3
A
82 101Right-handed alpha
Helix 4
AA4
A
123 143Right-handed alpha
Helix 5
AA5
A
152 158Right-handed alpha
Helix 6
AA6
A
159 162Right-handed 310
Helix 7
AA7
A
225 230Right-handed 310
Helix 8
AA8
A
286 288Right-handed 310
Helix 9
AA9
B
27 35Right-handed alpha
Helix 10
AB1
B
55 67Right-handed alpha
Helix 11
AB2
B
82 101Right-handed alpha
Helix 12
AB3
B
123 143Right-handed alpha
Helix 13
AB4
B
152 158Right-handed alpha
Helix 14
AB5
B
159 162Right-handed 310
Helix 15
AB6
B
225 230Right-handed 310
Helix 16
AB7
B
286 288Right-handed 310
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There are 6 sheets in PDB entry 5JIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
38 44anti-parallel
Strand 3
A
70 75parallel
Strand 4
A
111 113parallel
Strand 5
A
147 151parallel
Strand 6
A
175 178parallel
Strand 7
A
201 208parallel
Strand 8
A
217 221anti-parallel
Strand 9
A
15 19anti-parallel
Strand 10
A
38 44parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 243first strand
Strand 2
A
246 250anti-parallel
Strand 3
A
280 284anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 275first strand
Strand 2
A
259 266anti-parallel
Strand 3
A
296 304anti-parallel
Strand 4
A
314 318anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
38 44anti-parallel
Strand 3
B
70 75parallel
Strand 4
B
111 113parallel
Strand 5
B
147 151parallel
Strand 6
B
175 178parallel
Strand 7
B
201 208parallel
Strand 8
B
217 221anti-parallel
Strand 9
B
15 19anti-parallel
Strand 10
B
38 44parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 243first strand
Strand 2
B
246 250anti-parallel
Strand 3
B
280 284anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 275first strand
Strand 2
B
259 266anti-parallel
Strand 3
B
296 304anti-parallel
Strand 4
B
314 318anti-parallel
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