Analysis of interatomic Contacts of Structural Units in PDB entry:
5JIR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JIR entry

There are 2 chains in PDB entry 5JIR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 63	ASP 476
A	ALA 64	ASP 476

There are 34 helices in PDB entry 5JIR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	96	118	Right-handed alpha
Helix 2	AA2	B	126	133	Right-handed alpha
Helix 3	AA3	B	137	143	Right-handed alpha
Helix 4	AA4	B	170	175	Right-handed alpha
Helix 5	AA5	B	176	178	Right-handed 310
Helix 6	AA6	B	238	242	Right-handed 310
Helix 7	AA7	B	243	251	Right-handed alpha
Helix 8	AA8	B	257	261	Right-handed 310
Helix 9	AA9	B	264	269	Right-handed alpha
Helix 10	AB1	B	291	300	Right-handed alpha
Helix 11	AB2	B	301	311	Right-handed alpha
Helix 12	AB3	B	318	322	Right-handed alpha
Helix 13	AB4	B	332	350	Right-handed alpha
Helix 14	AB5	B	380	396	Right-handed alpha
Helix 15	AB6	B	414	435	Right-handed alpha
Helix 16	AB7	B	439	441	Right-handed 310
Helix 17	AB8	B	459	467	Right-handed alpha
Helix 18	AB9	A	96	118	Right-handed alpha
Helix 19	AC1	A	126	133	Right-handed alpha
Helix 20	AC2	A	137	143	Right-handed alpha
Helix 21	AC3	A	144	148	Right-handed 310
Helix 22	AC4	A	170	175	Right-handed alpha
Helix 23	AC5	A	176	178	Right-handed 310
Helix 24	AC6	A	238	242	Right-handed 310
Helix 25	AC7	A	243	251	Right-handed alpha
Helix 26	AC8	A	260	269	Right-handed alpha
Helix 27	AC9	A	291	300	Right-handed alpha
Helix 28	AD1	A	301	311	Right-handed alpha
Helix 29	AD2	A	318	322	Right-handed alpha
Helix 30	AD3	A	332	350	Right-handed alpha
Helix 31	AD4	A	380	396	Right-handed alpha
Helix 32	AD5	A	414	436	Right-handed alpha
Helix 33	AD6	A	439	441	Right-handed 310
Helix 34	AD7	A	459	467	Right-handed alpha

There are 10 sheets in PDB entry 5JIR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	161	169	anti-parallel
Strand 3	B	77	85	anti-parallel
Strand 4	B	65	72	anti-parallel
Strand 5	B	323	325	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	256	first strand
Strand 2	B	313	316	parallel
Strand 3	B	200	204	parallel
Strand 4	B	272	276	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	210	first strand
Strand 2	B	217	218	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	228	230	anti-parallel
Strand 3	B	287	290	parallel
Strand 4	B	279	281	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	363	368	anti-parallel
Strand 3	B	468	475	anti-parallel
Strand 4	B	401	407	anti-parallel
Strand 5	B	443	447	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	153	first strand
Strand 2	A	161	169	anti-parallel
Strand 3	A	77	85	anti-parallel
Strand 4	A	65	72	anti-parallel
Strand 5	A	323	325	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	256	first strand
Strand 2	A	313	316	parallel
Strand 3	A	201	204	parallel
Strand 4	A	273	276	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	210	first strand
Strand 2	A	217	218	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	228	230	anti-parallel
Strand 3	A	287	290	parallel
Strand 4	A	279	281	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	363	368	anti-parallel
Strand 3	A	468	475	anti-parallel
Strand 4	A	401	407	anti-parallel
Strand 5	A	443	447	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JIR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JIR