Analysis of interatomic Contacts of Structural Units in PDB entry:
5JIU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JIU entry

There are 4 chains in PDB entry 5JIU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 141ILE 349
B
 ASN 141ILE 349
C
 GLU 501GLN 506
D
 GLU 501GLN 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5JIU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
141 155Right-handed alpha
Helix 2
AA2
A
209 212Right-handed 310
Helix 3
AA3
A
337 349Right-handed alpha
Helix 4
AA4
B
142 155Right-handed alpha
Helix 5
AA5
B
209 212Right-handed 310
Helix 6
AA6
B
337 349Right-handed alpha
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There are 4 sheets in PDB entry 5JIU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 174first strand
Strand 2
A
200 204anti-parallel
Strand 3
A
313 318anti-parallel
Strand 4
A
231 235anti-parallel
Strand 5
A
251 255anti-parallel
Strand 6
A
260 263anti-parallel
Strand 7
A
269 270anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 181first strand
Strand 2
A
186 189anti-parallel
Strand 3
A
323 328anti-parallel
Strand 4
A
214 224anti-parallel
Strand 5
A
280 286anti-parallel
Strand 6
A
291 296anti-parallel
Strand 7
A
299 305anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 174first strand
Strand 2
B
200 204anti-parallel
Strand 3
B
313 318anti-parallel
Strand 4
B
231 235anti-parallel
Strand 5
B
251 255anti-parallel
Strand 6
B
260 263anti-parallel
Strand 7
B
269 270anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 181first strand
Strand 2
B
186 189anti-parallel
Strand 3
B
323 328anti-parallel
Strand 4
B
214 224anti-parallel
Strand 5
B
280 286anti-parallel
Strand 6
B
291 296anti-parallel
Strand 7
B
299 305anti-parallel
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