Analysis of interatomic Contacts of Structural Units in PDB entry:
5JJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JJ1 entry

There are 12 chains in PDB entry 5JJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 9LEU 593
B
 GLU 9LEU 593
C
 GLU 9LEU 593
D
 GLU 9LEU 593
E
 GLU 9LEU 593
F
 GLU 9LEU 593
G
 GLU 9LEU 593
H
 GLU 9LEU 593
I
 GLU 9LEU 593
J
 GLU 9LEU 593
K
 GLU 9LEU 593
L
 GLU 9LEU 593
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are244 helices in PDB entry 5JJ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 23Right-handed 310
Helix 2
AA2
A
27 31Right-handed 310
Helix 3
AA3
A
60 66Right-handed alpha
Helix 4
AA4
A
66 72Right-handed alpha
Helix 5
AA5
A
99 103Right-handed 310
Helix 6
AA6
A
104 109Right-handed alpha
Helix 7
AA7
A
109 115Right-handed alpha
Helix 8
AA8
A
184 190Right-handed 310
Helix 9
AA9
A
238 242Right-handed 310
Helix 10
AB1
A
258 262Right-handed 310
Helix 11
AB2
A
319 324Right-handed alpha
Helix 12
AB3
A
328 330Right-handed 310
Helix 13
AB4
A
331 344Right-handed alpha
Helix 14
AB5
A
360 365Right-handed 310
Helix 15
AB6
A
400 416Right-handed alpha
Helix 16
AB7
A
423 427Right-handed 310
Helix 17
AB8
A
430 435Right-handed alpha
Helix 18
AB9
A
441 450Right-handed alpha
Helix 19
AC1
A
465 470Right-handed 310
Helix 20
AC2
A
547 554Right-handed alpha
Helix 21
AC3
A
564 571Right-handed alpha
Helix 22
AC4
A
574 579Right-handed 310
Helix 23
AC5
B
13 26Right-handed alpha
Helix 24
AC6
B
27 32Right-handed alpha
Helix 25
AC7
B
33 38Right-handed alpha
Helix 26
AC8
B
61 67Right-handed alpha
Helix 27
AC9
B
68 72Right-handed 310
Helix 28
AD1
B
93 98Right-handed 310
Helix 29
AD2
B
105 110Right-handed alpha
Helix 30
AD3
B
111 116Right-handed alpha
Helix 31
AD4
B
184 190Right-handed 310
Helix 32
AD5
B
252 256Right-handed 310
Helix 33
AD6
B
322 341Right-handed alpha
Helix 34
AD7
B
342 344Right-handed 310
Helix 35
AD8
B
359 365Right-handed 310
Helix 36
AD9
B
400 413Right-handed alpha
Helix 37
AE1
B
414 417Right-handed 310
Helix 38
AE2
B
436 441Right-handed alpha
Helix 39
AE3
B
460 474Right-handed 310
Helix 40
AE4
B
529 533Right-handed 310
Helix 41
AE5
B
547 551Right-handed 310
Helix 42
AE6
B
552 557Right-handed alpha
Helix 43
AE7
C
11 15Right-handed 310
Helix 44
AE8
C
16 17Right-handed 310
Helix 45
AE9
C
18 25Right-handed alpha
Helix 46
AF1
C
26 38Right-handed alpha
Helix 47
AF2
C
62 72Right-handed alpha
Helix 48
AF3
C
87 91Right-handed 310
Helix 49
AF4
C
96 102Right-handed 310
Helix 50
AF5
C
104 106Right-handed 310
Helix 51
AF6
C
107 114Right-handed alpha
Helix 52
AF7
C
115 118Right-handed 310
Helix 53
AF8
C
182 187Right-handed alpha
Helix 54
AF9
C
258 262Right-handed 310
Helix 55
AG1
C
323 333Right-handed alpha
Helix 56
AG2
C
333 342Right-handed alpha
Helix 57
AG3
C
399 416Right-handed alpha
Helix 58
AG4
C
432 437Right-handed alpha
Helix 59
AG5
C
437 442Right-handed alpha
Helix 60
AG6
C
442 447Right-handed alpha
Helix 61
AG7
C
460 471Right-handed 310
Helix 62
AG8
C
545 554Right-handed alpha
Helix 63
AG9
C
563 565Right-handed 310
Helix 64
AH1
C
566 571Right-handed alpha
Helix 65
AH2
C
572 574Right-handed 310
Helix 66
AH3
D
12 17Right-handed 310
Helix 67
AH4
D
24 39Right-handed alpha
Helix 68
AH5
D
60 72Right-handed alpha
Helix 69
AH6
D
87 92Right-handed 310
Helix 70
AH7
D
109 118Right-handed 310
Helix 71
AH8
D
258 262Right-handed 310
Helix 72
AH9
D
320 325Right-handed alpha
Helix 73
AI1
D
326 337Right-handed alpha
Helix 74
AI2
D
337 343Right-handed alpha
Helix 75
AI3
D
387 391Right-handed 310
Helix 76
AI4
D
401 417Right-handed alpha
Helix 77
AI5
D
430 437Right-handed alpha
Helix 78
AI6
D
438 440Right-handed 310
Helix 79
AI7
D
442 447Right-handed alpha
Helix 80
AI8
D
459 471Right-handed 310
Helix 81
AI9
D
533 537Right-handed 310
Helix 82
AJ1
D
547 555Right-handed alpha
Helix 83
AJ2
D
558 562Right-handed 310
Helix 84
AJ3
D
567 572Right-handed alpha
Helix 85
AJ4
E
14 25Right-handed alpha
Helix 86
AJ5
E
27 34Right-handed alpha
Helix 87
AJ6
E
34 41Right-handed alpha
Helix 88
AJ7
E
60 71Right-handed alpha
Helix 89
AJ8
E
92 100Right-handed alpha
Helix 90
AJ9
E
104 109Right-handed 310
Helix 91
AK1
E
110 116Right-handed alpha
Helix 92
AK2
E
182 186Right-handed 310
Helix 93
AK3
E
322 327Right-handed alpha
Helix 94
AK4
E
332 344Right-handed alpha
Helix 95
AK5
E
359 364Right-handed 310
Helix 96
AK6
E
387 391Right-handed 310
Helix 97
AK7
E
400 417Right-handed alpha
Helix 98
AK8
E
431 436Right-handed alpha
Helix 99
AK9
E
437 439Right-handed 310
Helix 100
AL1
E
441 446Right-handed alpha
Helix 101
AL2
E
458 464Right-handed 310
Helix 102
AL3
E
469 474Right-handed 310
Helix 103
AL4
E
486 490Right-handed 310
Helix 104
AL5
E
529 534Right-handed alpha
Helix 105
AL6
E
548 553Right-handed alpha
Helix 106
AL7
E
566 570Right-handed 310
Helix 107
AL8
F
14 19Right-handed alpha
Helix 108
AL9
F
20 25Right-handed 310
Helix 109
AM1
F
27 40Right-handed alpha
Helix 110
AM2
F
61 68Right-handed alpha
Helix 111
AM3
F
69 74Right-handed 310
Helix 112
AM4
F
95 101Right-handed 310
Helix 113
AM5
F
105 116Right-handed 310
Helix 114
AM6
F
182 190Right-handed 310
Helix 115
AM7
F
323 326Right-handed 310
Helix 116
AM8
F
327 333Right-handed alpha
Helix 117
AM9
F
334 336Right-handed 310
Helix 118
AN1
F
339 344Right-handed alpha
Helix 119
AN2
F
397 414Right-handed alpha
Helix 120
AN3
F
415 417Right-handed 310
Helix 121
AN4
F
430 436Right-handed alpha
Helix 122
AN5
F
436 441Right-handed alpha
Helix 123
AN6
F
441 449Right-handed alpha
Helix 124
AN7
F
468 474Right-handed 310
Helix 125
AN8
F
529 534Right-handed alpha
Helix 126
AN9
F
546 552Right-handed alpha
Helix 127
AO1
F
564 566Right-handed 310
Helix 128
AO2
F
567 572Right-handed alpha
Helix 129
AO3
G
13 21Right-handed alpha
Helix 130
AO4
G
22 28Right-handed alpha
Helix 131
AO5
G
28 33Right-handed alpha
Helix 132
AO6
G
33 38Right-handed alpha
Helix 133
AO7
G
61 67Right-handed alpha
Helix 134
AO8
G
68 72Right-handed 310
Helix 135
AO9
G
87 103Right-handed alpha
Helix 136
AP1
G
108 117Right-handed alpha
Helix 137
AP2
G
186 190Right-handed 310
Helix 138
AP3
G
327 337Right-handed 310
Helix 139
AP4
G
400 416Right-handed alpha
Helix 140
AP5
G
430 433Right-handed 310
Helix 141
AP6
G
434 445Right-handed alpha
Helix 142
AP7
G
464 470Right-handed 310
Helix 143
AP8
G
486 490Right-handed 310
Helix 144
AP9
G
545 549Right-handed 310
Helix 145
AQ1
G
551 555Right-handed 310
Helix 146
AQ2
G
566 571Right-handed alpha
Helix 147
AQ3
H
14 23Right-handed alpha
Helix 148
AQ4
H
26 31Right-handed alpha
Helix 149
AQ5
H
33 38Right-handed alpha
Helix 150
AQ6
H
63 69Right-handed alpha
Helix 151
AQ7
H
70 72Right-handed 310
Helix 152
AQ8
H
90 99Right-handed 310
Helix 153
AQ9
H
100 104Right-handed 310
Helix 154
AR1
H
110 116Right-handed alpha
Helix 155
AR2
H
182 187Right-handed alpha
Helix 156
AR3
H
188 190Right-handed 310
Helix 157
AR4
H
238 242Right-handed 310
Helix 158
AR5
H
320 337Right-handed alpha
Helix 159
AR6
H
337 344Right-handed alpha
Helix 160
AR7
H
359 364Right-handed 310
Helix 161
AR8
H
398 407Right-handed alpha
Helix 162
AR9
H
408 414Right-handed alpha
Helix 163
AS1
H
430 437Right-handed alpha
Helix 164
AS2
H
464 474Right-handed 310
Helix 165
AS3
H
545 552Right-handed alpha
Helix 166
AS4
H
565 571Right-handed 310
Helix 167
AS5
H
586 590Right-handed 310
Helix 168
AS6
I
21 25Right-handed 310
Helix 169
AS7
I
61 69Right-handed alpha
Helix 170
AS8
I
70 74Right-handed 310
Helix 171
AS9
I
87 95Right-handed 310
Helix 172
AT1
I
96 101Right-handed alpha
Helix 173
AT2
I
109 121Right-handed alpha
Helix 174
AT3
I
186 190Right-handed 310
Helix 175
AT4
I
258 262Right-handed 310
Helix 176
AT5
I
278 282Right-handed 310
Helix 177
AT6
I
330 335Right-handed alpha
Helix 178
AT7
I
339 344Right-handed 310
Helix 179
AT8
I
360 365Right-handed alpha
Helix 180
AT9
I
401 416Right-handed alpha
Helix 181
AU1
I
430 437Right-handed alpha
Helix 182
AU2
I
458 464Right-handed 310
Helix 183
AU3
I
466 474Right-handed 310
Helix 184
AU4
I
532 536Right-handed 310
Helix 185
AU5
I
545 549Right-handed 310
Helix 186
AU6
I
565 570Right-handed 310
Helix 187
AU7
I
574 580Right-handed 310
Helix 188
AU8
J
12 14Right-handed 310
Helix 189
AU9
J
15 20Right-handed alpha
Helix 190
AV1
J
25 41Right-handed alpha
Helix 191
AV2
J
61 69Right-handed alpha
Helix 192
AV3
J
87 94Right-handed 310
Helix 193
AV4
J
95 102Right-handed alpha
Helix 194
AV5
J
103 104Right-handed 310
Helix 195
AV6
J
105 109Right-handed 310
Helix 196
AV7
J
110 116Right-handed alpha
Helix 197
AV8
J
322 331Right-handed alpha
Helix 198
AV9
J
359 364Right-handed 310
Helix 199
AW1
J
398 415Right-handed alpha
Helix 200
AW2
J
430 442Right-handed alpha
Helix 201
AW3
J
443 445Right-handed 310
Helix 202
AW4
J
466 474Right-handed 310
Helix 203
AW5
J
533 537Right-handed 310
Helix 204
AW6
J
562 564Right-handed 310
Helix 205
AW7
J
565 570Right-handed alpha
Helix 206
AW8
J
570 575Right-handed alpha
Helix 207
AW9
K
12 17Right-handed alpha
Helix 208
AX1
K
18 20Right-handed 310
Helix 209
AX2
K
27 32Right-handed alpha
Helix 210
AX3
K
33 40Right-handed alpha
Helix 211
AX4
K
60 69Right-handed alpha
Helix 212
AX5
K
87 91Right-handed 310
Helix 213
AX6
K
109 115Right-handed alpha
Helix 214
AX7
K
182 188Right-handed 310
Helix 215
AX8
K
258 262Right-handed 310
Helix 216
AX9
K
278 282Right-handed 310
Helix 217
AY1
K
328 331Right-handed 310
Helix 218
AY2
K
332 337Right-handed alpha
Helix 219
AY3
K
339 344Right-handed alpha
Helix 220
AY4
K
359 363Right-handed 310
Helix 221
AY5
K
399 402Right-handed 310
Helix 222
AY6
K
403 410Right-handed alpha
Helix 223
AY7
K
411 415Right-handed 310
Helix 224
AY8
K
430 441Right-handed alpha
Helix 225
AY9
K
441 449Right-handed alpha
Helix 226
AZ1
K
465 471Right-handed 310
Helix 227
AZ2
K
485 489Right-handed 310
Helix 228
AZ3
K
545 550Right-handed alpha
Helix 229
AZ4
K
551 556Right-handed alpha
Helix 230
AZ5
K
575 579Right-handed 310
Helix 231
AZ6
L
14 24Right-handed alpha
Helix 232
AZ7
L
30 35Right-handed alpha
Helix 233
AZ8
L
61 69Right-handed alpha
Helix 234
AZ9
L
98 104Right-handed 310
Helix 235
BA1
L
109 121Right-handed alpha
Helix 236
BA2
L
253 262Right-handed 310
Helix 237
BA3
L
319 333Right-handed alpha
Helix 238
BA4
L
334 339Right-handed alpha
Helix 239
BA5
L
340 344Right-handed 310
Helix 240
BA6
L
400 417Right-handed alpha
Helix 241
BA7
L
433 440Right-handed alpha
Helix 242
BA8
L
441 449Right-handed 310
Helix 243
BA9
L
460 464Right-handed 310
Helix 244
BB1
L
465 470Right-handed alpha
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There are 4 sheets in PDB entry 5JJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 178first strand
Strand 2
C
218 220anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
176 177first strand
Strand 2
E
219 220anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
126 127first strand
Strand 2
F
147 148anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
126 127first strand
Strand 2
K
147 148anti-parallel
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