Analysis of interatomic Contacts of Structural Units in PDB entry:
5JJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JJ5 entry

There are 2 chains in PDB entry 5JJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 34LYS 341
B
 ASP 38LYS 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5JJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 72Right-handed alpha
Helix 2
AA2
A
93 103Right-handed alpha
Helix 3
AA3
A
117 124Right-handed alpha
Helix 4
AA4
A
137 148Right-handed alpha
Helix 5
AA5
A
161 173Right-handed alpha
Helix 6
AA6
A
175 197Right-handed alpha
Helix 7
AA7
A
197 205Right-handed alpha
Helix 8
AA8
A
229 238Right-handed alpha
Helix 9
AA9
A
245 250Right-handed alpha
Helix 10
AB1
A
262 268Right-handed 310
Helix 11
AB2
A
280 287Right-handed alpha
Helix 12
AB3
A
290 293Right-handed 310
Helix 13
AB4
A
294 300Right-handed alpha
Helix 14
AB5
A
309 314Right-handed alpha
Helix 15
AB6
A
318 338Right-handed alpha
Helix 16
AB7
B
64 72Right-handed alpha
Helix 17
AB8
B
93 103Right-handed alpha
Helix 18
AB9
B
117 124Right-handed alpha
Helix 19
AC1
B
137 148Right-handed alpha
Helix 20
AC2
B
161 173Right-handed alpha
Helix 21
AC3
B
175 197Right-handed alpha
Helix 22
AC4
B
197 205Right-handed alpha
Helix 23
AC5
B
229 238Right-handed alpha
Helix 24
AC6
B
243 250Right-handed 310
Helix 25
AC7
B
263 268Right-handed 310
Helix 26
AC8
B
280 287Right-handed alpha
Helix 27
AC9
B
290 293Right-handed 310
Helix 28
AD1
B
294 299Right-handed alpha
Helix 29
AD2
B
309 314Right-handed alpha
Helix 30
AD3
B
318 339Right-handed alpha
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There are 8 sheets in PDB entry 5JJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
47 51anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
128 130parallel
Strand 3
A
150 151parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
109 110parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 260first strand
Strand 2
A
221 225anti-parallel
Strand 3
A
209 213anti-parallel
Strand 4
A
272 277parallel
Strand 5
A
302 306parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
47 51anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
128 130parallel
Strand 3
B
150 151parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 80first strand
Strand 2
B
109 110parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 260first strand
Strand 2
B
221 225anti-parallel
Strand 3
B
209 213anti-parallel
Strand 4
B
272 277parallel
Strand 5
B
302 306parallel
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