Analysis of interatomic Contacts of Structural Units in PDB entry:
5JJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JJ6 entry

There are 2 chains in PDB entry 5JJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 145SER 478
B
 GLU 138MET 474
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5JJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
146 160Right-handed alpha
Helix 2
AA2
A
163 177Right-handed alpha
Helix 3
AA3
A
180 194Right-handed alpha
Helix 4
AA4
A
196 211Right-handed alpha
Helix 5
AA5
A
214 245Right-handed alpha
Helix 6
AA6
A
251 273Right-handed alpha
Helix 7
AA7
A
279 290Right-handed alpha
Helix 8
AA8
A
297 317Right-handed alpha
Helix 9
AA9
A
327 340Right-handed alpha
Helix 10
AB1
A
368 381Right-handed alpha
Helix 11
AB2
A
382 386Right-handed 310
Helix 12
AB3
A
388 404Right-handed alpha
Helix 13
AB4
A
409 424Right-handed alpha
Helix 14
AB5
A
433 435Right-handed 310
Helix 15
AB6
A
436 448Right-handed alpha
Helix 16
AB7
A
452 477Right-handed alpha
Helix 17
AB8
B
141 153Right-handed alpha
Helix 18
AB9
B
162 177Right-handed alpha
Helix 19
AC1
B
180 194Right-handed alpha
Helix 20
AC2
B
196 211Right-handed alpha
Helix 21
AC3
B
214 247Right-handed alpha
Helix 22
AC4
B
252 275Right-handed alpha
Helix 23
AC5
B
279 289Right-handed alpha
Helix 24
AC6
B
297 318Right-handed alpha
Helix 25
AC7
B
327 340Right-handed alpha
Helix 26
AC8
B
364 381Right-handed alpha
Helix 27
AC9
B
382 386Right-handed 310
Helix 28
AD1
B
388 404Right-handed alpha
Helix 29
AD2
B
409 424Right-handed alpha
Helix 30
AD3
B
433 435Right-handed 310
Helix 31
AD4
B
436 448Right-handed alpha
Helix 32
AD5
B
452 473Right-handed alpha
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There are no sheets in PDB entry 5JJ6
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