Analysis of interatomic Contacts of Structural Units in PDB entry:
5JJM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JJM entry

There are 13 chains in PDB entry 5JJM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 668	GLN 919
M	SER 504	ASP 505
B	CYS 669	VAL 685
B	ALA 687	GLN 919
F	SER 504	ASP 505
C	GLU 668	HIS 917
K	SER 504	ASP 505
D	CYS 669	HIS 917
L	SER 504	ASP 505
G	SER 62	ASP 68
H	SER 62	THR 69
I	SER 62	THR 69
J	SER 62	THR 69

There are 49 helices in PDB entry 5JJM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	673	681	Right-handed alpha
Helix 2	AA2	A	696	722	Right-handed alpha
Helix 3	AA3	A	724	728	Right-handed 310
Helix 4	AA4	A	729	758	Right-handed alpha
Helix 5	AA5	A	771	778	Right-handed alpha
Helix 6	AA6	A	780	797	Right-handed alpha
Helix 7	AA7	A	800	813	Right-handed alpha
Helix 8	AA8	A	823	844	Right-handed alpha
Helix 9	AA9	A	850	882	Right-handed alpha
Helix 10	AB1	A	883	888	Right-handed 310
Helix 11	AB2	A	892	902	Right-handed alpha
Helix 12	AB3	A	902	908	Right-handed alpha
Helix 13	AB4	B	673	681	Right-handed alpha
Helix 14	AB5	B	696	722	Right-handed alpha
Helix 15	AB6	B	724	728	Right-handed 310
Helix 16	AB7	B	729	758	Right-handed alpha
Helix 17	AB8	B	771	778	Right-handed alpha
Helix 18	AB9	B	780	797	Right-handed alpha
Helix 19	AC1	B	800	813	Right-handed alpha
Helix 20	AC2	B	823	844	Right-handed alpha
Helix 21	AC3	B	850	882	Right-handed alpha
Helix 22	AC4	B	883	888	Right-handed 310
Helix 23	AC5	B	892	908	Right-handed alpha
Helix 24	AC6	C	673	681	Right-handed alpha
Helix 25	AC7	C	696	721	Right-handed alpha
Helix 26	AC8	C	724	728	Right-handed 310
Helix 27	AC9	C	729	758	Right-handed alpha
Helix 28	AD1	C	771	778	Right-handed alpha
Helix 29	AD2	C	780	797	Right-handed alpha
Helix 30	AD3	C	800	813	Right-handed alpha
Helix 31	AD4	C	823	844	Right-handed alpha
Helix 32	AD5	C	850	882	Right-handed alpha
Helix 33	AD6	C	883	888	Right-handed 310
Helix 34	AD7	C	892	908	Right-handed alpha
Helix 35	AD8	D	673	681	Right-handed alpha
Helix 36	AD9	D	696	722	Right-handed alpha
Helix 37	AE1	D	724	728	Right-handed 310
Helix 38	AE2	D	729	758	Right-handed alpha
Helix 39	AE3	D	771	778	Right-handed alpha
Helix 40	AE4	D	780	797	Right-handed alpha
Helix 41	AE5	D	800	813	Right-handed alpha
Helix 42	AE6	D	823	845	Right-handed alpha
Helix 43	AE7	D	850	884	Right-handed alpha
Helix 44	AE8	D	885	888	Right-handed 310
Helix 45	AE9	D	892	908	Right-handed alpha
Helix 46	AF1	G	63	68	Right-handed alpha
Helix 47	AF2	H	63	69	Right-handed alpha
Helix 48	AF3	I	63	69	Right-handed alpha
Helix 49	AF4	J	63	68	Right-handed alpha

There are 8 sheets in PDB entry 5JJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	762	765	first strand
Strand 2	A	768	770	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	815	817	first strand
Strand 2	A	911	913	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	762	765	first strand
Strand 2	B	768	770	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	815	817	first strand
Strand 2	B	911	913	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	762	765	first strand
Strand 2	C	768	770	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	815	817	first strand
Strand 2	C	911	913	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	762	765	first strand
Strand 2	D	768	770	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	815	817	first strand
Strand 2	D	911	913	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JJM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JJM