Analysis of interatomic Contacts of Structural Units in PDB entry:
5JJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JJN entry

There are 4 chains in PDB entry 5JJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3GLU 225
B
 GLY 23PHE 83
C
 GLY 3ALA 217
D
 GLY 23PHE 83
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 5JJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 26Right-handed alpha
Helix 2
AA2
A
33 56Right-handed alpha
Helix 3
AA3
A
70 92Right-handed alpha
Helix 4
AA4
A
94 117Right-handed alpha
Helix 5
AA5
A
121 143Right-handed alpha
Helix 6
AA6
A
143 150Right-handed alpha
Helix 7
AA7
A
153 172Right-handed alpha
Helix 8
AA8
A
173 181Right-handed alpha
Helix 9
AA9
A
189 223Right-handed alpha
Helix 10
AB1
B
24 49Right-handed alpha
Helix 11
AB2
B
52 82Right-handed alpha
Helix 12
AB3
C
4 26Right-handed alpha
Helix 13
AB4
C
33 56Right-handed alpha
Helix 14
AB5
C
70 92Right-handed alpha
Helix 15
AB6
C
94 117Right-handed alpha
Helix 16
AB7
C
121 143Right-handed alpha
Helix 17
AB8
C
143 151Right-handed alpha
Helix 18
AB9
C
153 172Right-handed alpha
Helix 19
AC1
C
173 181Right-handed alpha
Helix 20
AC2
C
189 217Right-handed alpha
Helix 21
AC3
D
24 49Right-handed alpha
Helix 22
AC4
D
52 82Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5JJN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
66 69anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 63first strand
Strand 2
C
66 69anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il