Analysis of interatomic Contacts of Structural Units in PDB entry:
5JJP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JJP entry

There are 4 chains in PDB entry 5JJP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ILE 423
B	PRO 3	ASP 424
C	SER 2	ILE 423
D	SER 2	ILE 423

There are 58 helices in PDB entry 5JJP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	19	Right-handed alpha
Helix 2	AA2	A	20	26	Right-handed 310
Helix 3	AA3	A	46	62	Right-handed alpha
Helix 4	AA4	A	78	92	Right-handed alpha
Helix 5	AA5	A	103	115	Right-handed alpha
Helix 6	AA6	A	185	197	Right-handed alpha
Helix 7	AA7	A	215	228	Right-handed alpha
Helix 8	AA8	A	236	241	Right-handed alpha
Helix 9	AA9	A	242	253	Right-handed alpha
Helix 10	AB1	A	261	264	Right-handed 310
Helix 11	AB2	A	265	272	Right-handed alpha
Helix 12	AB3	A	272	278	Right-handed alpha
Helix 13	AB4	A	293	304	Right-handed alpha
Helix 14	AB5	A	381	388	Right-handed alpha
Helix 15	AB6	A	395	399	Right-handed 310
Helix 16	AB7	B	14	21	Right-handed alpha
Helix 17	AB8	B	22	26	Right-handed 310
Helix 18	AB9	B	46	62	Right-handed alpha
Helix 19	AC1	B	78	92	Right-handed alpha
Helix 20	AC2	B	103	115	Right-handed alpha
Helix 21	AC3	B	185	197	Right-handed alpha
Helix 22	AC4	B	215	228	Right-handed alpha
Helix 23	AC5	B	236	241	Right-handed alpha
Helix 24	AC6	B	242	253	Right-handed alpha
Helix 25	AC7	B	261	264	Right-handed 310
Helix 26	AC8	B	265	272	Right-handed alpha
Helix 27	AC9	B	272	278	Right-handed alpha
Helix 28	AD1	B	293	304	Right-handed alpha
Helix 29	AD2	B	381	388	Right-handed alpha
Helix 30	AD3	B	395	399	Right-handed 310
Helix 31	AD4	C	14	21	Right-handed alpha
Helix 32	AD5	C	22	26	Right-handed 310
Helix 33	AD6	C	46	62	Right-handed alpha
Helix 34	AD7	C	78	92	Right-handed alpha
Helix 35	AD8	C	103	115	Right-handed alpha
Helix 36	AD9	C	185	197	Right-handed alpha
Helix 37	AE1	C	215	228	Right-handed alpha
Helix 38	AE2	C	245	253	Right-handed alpha
Helix 39	AE3	C	261	265	Right-handed 310
Helix 40	AE4	C	273	278	Right-handed alpha
Helix 41	AE5	C	296	304	Right-handed alpha
Helix 42	AE6	C	381	388	Right-handed alpha
Helix 43	AE7	C	395	399	Right-handed 310
Helix 44	AE8	D	14	21	Right-handed alpha
Helix 45	AE9	D	22	26	Right-handed 310
Helix 46	AF1	D	46	62	Right-handed alpha
Helix 47	AF2	D	78	92	Right-handed alpha
Helix 48	AF3	D	103	115	Right-handed alpha
Helix 49	AF4	D	185	197	Right-handed alpha
Helix 50	AF5	D	215	228	Right-handed alpha
Helix 51	AF6	D	236	241	Right-handed alpha
Helix 52	AF7	D	242	253	Right-handed alpha
Helix 53	AF8	D	261	264	Right-handed 310
Helix 54	AF9	D	265	272	Right-handed alpha
Helix 55	AG1	D	272	278	Right-handed alpha
Helix 56	AG2	D	293	304	Right-handed alpha
Helix 57	AG3	D	381	388	Right-handed alpha
Helix 58	AG4	D	395	399	Right-handed 310

There are 24 sheets in PDB entry 5JJP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	35	first strand
Strand 2	A	41	45	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	98	first strand
Strand 2	A	71	74	parallel
Strand 3	A	118	122	parallel
Strand 4	A	135	140	parallel
Strand 5	A	143	148	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	170	first strand
Strand 2	A	180	184	anti-parallel
Strand 3	A	377	378	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	234	first strand
Strand 2	A	206	209	parallel
Strand 3	A	257	260	parallel
Strand 4	A	284	288	parallel
Strand 5	A	308	313	parallel
Strand 6	A	322	325	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	365	370	anti-parallel
Strand 3	A	401	411	anti-parallel
Strand 4	A	389	391	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	365	370	anti-parallel
Strand 3	A	401	411	anti-parallel
Strand 4	A	417	422	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	35	first strand
Strand 2	B	41	45	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	98	first strand
Strand 2	B	71	74	parallel
Strand 3	B	118	122	parallel
Strand 4	B	135	140	parallel
Strand 5	B	143	148	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	170	first strand
Strand 2	B	180	184	anti-parallel
Strand 3	B	377	378	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	206	209	parallel
Strand 3	B	257	260	parallel
Strand 4	B	284	288	parallel
Strand 5	B	308	313	parallel
Strand 6	B	322	325	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	365	370	anti-parallel
Strand 3	B	401	411	anti-parallel
Strand 4	B	389	391	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	365	370	anti-parallel
Strand 3	B	401	411	anti-parallel
Strand 4	B	417	422	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	35	first strand
Strand 2	C	41	45	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	71	74	parallel
Strand 3	C	118	122	parallel
Strand 4	C	135	140	parallel
Strand 5	C	143	148	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	169	first strand
Strand 2	C	181	184	anti-parallel
Strand 3	C	377	378	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	234	first strand
Strand 2	C	206	209	parallel
Strand 3	C	257	260	parallel
Strand 4	C	284	287	parallel
Strand 5	C	308	313	parallel
Strand 6	C	322	325	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	351	first strand
Strand 2	C	365	370	anti-parallel
Strand 3	C	401	411	anti-parallel
Strand 4	C	389	391	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	351	first strand
Strand 2	C	365	370	anti-parallel
Strand 3	C	401	411	anti-parallel
Strand 4	C	417	422	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	35	first strand
Strand 2	D	41	45	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	98	first strand
Strand 2	D	71	74	parallel
Strand 3	D	118	122	parallel
Strand 4	D	135	140	parallel
Strand 5	D	143	148	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	170	first strand
Strand 2	D	180	184	anti-parallel
Strand 3	D	377	378	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	234	first strand
Strand 2	D	206	209	parallel
Strand 3	D	257	260	parallel
Strand 4	D	284	288	parallel
Strand 5	D	308	313	parallel
Strand 6	D	322	325	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	351	first strand
Strand 2	D	365	370	anti-parallel
Strand 3	D	401	411	anti-parallel
Strand 4	D	389	391	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	351	first strand
Strand 2	D	365	370	anti-parallel
Strand 3	D	401	411	anti-parallel
Strand 4	D	417	422	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JJP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JJP