Analysis of interatomic Contacts of Structural Units in PDB entry:
5JJQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JJQ entry

There are 4 chains in PDB entry 5JJQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	PRO 508
B	VAL 5	PRO 508
C	ALA 9	PRO 508
D	SER 2	PRO 508

There are 78 helices in PDB entry 5JJQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	21	Right-handed alpha
Helix 2	AA2	A	22	27	Right-handed alpha
Helix 3	AA3	A	46	62	Right-handed alpha
Helix 4	AA4	A	78	91	Right-handed alpha
Helix 5	AA5	A	103	115	Right-handed alpha
Helix 6	AA6	A	185	197	Right-handed alpha
Helix 7	AA7	A	215	227	Right-handed alpha
Helix 8	AA8	A	236	241	Right-handed 310
Helix 9	AA9	A	242	253	Right-handed alpha
Helix 10	AB1	A	261	264	Right-handed 310
Helix 11	AB2	A	265	272	Right-handed alpha
Helix 12	AB3	A	272	278	Right-handed alpha
Helix 13	AB4	A	294	305	Right-handed alpha
Helix 14	AB5	A	316	320	Right-handed 310
Helix 15	AB6	A	382	389	Right-handed alpha
Helix 16	AB7	A	396	400	Right-handed 310
Helix 17	AB8	A	437	446	Right-handed alpha
Helix 18	AB9	A	480	490	Right-handed alpha
Helix 19	AC1	A	493	497	Right-handed 310
Helix 20	AC2	B	6	11	Right-handed alpha
Helix 21	AC3	B	15	21	Right-handed alpha
Helix 22	AC4	B	22	27	Right-handed alpha
Helix 23	AC5	B	46	62	Right-handed alpha
Helix 24	AC6	B	78	91	Right-handed alpha
Helix 25	AC7	B	103	115	Right-handed alpha
Helix 26	AC8	B	185	197	Right-handed alpha
Helix 27	AC9	B	215	227	Right-handed alpha
Helix 28	AD1	B	236	241	Right-handed 310
Helix 29	AD2	B	242	253	Right-handed alpha
Helix 30	AD3	B	261	264	Right-handed 310
Helix 31	AD4	B	265	272	Right-handed alpha
Helix 32	AD5	B	272	278	Right-handed alpha
Helix 33	AD6	B	294	305	Right-handed alpha
Helix 34	AD7	B	316	320	Right-handed 310
Helix 35	AD8	B	382	389	Right-handed alpha
Helix 36	AD9	B	396	400	Right-handed 310
Helix 37	AE1	B	437	446	Right-handed alpha
Helix 38	AE2	B	480	490	Right-handed alpha
Helix 39	AE3	B	493	497	Right-handed 310
Helix 40	AE4	C	15	21	Right-handed alpha
Helix 41	AE5	C	22	27	Right-handed alpha
Helix 42	AE6	C	46	62	Right-handed alpha
Helix 43	AE7	C	78	91	Right-handed alpha
Helix 44	AE8	C	103	115	Right-handed alpha
Helix 45	AE9	C	185	197	Right-handed alpha
Helix 46	AF1	C	215	227	Right-handed alpha
Helix 47	AF2	C	236	241	Right-handed 310
Helix 48	AF3	C	242	253	Right-handed alpha
Helix 49	AF4	C	261	264	Right-handed 310
Helix 50	AF5	C	265	272	Right-handed alpha
Helix 51	AF6	C	272	278	Right-handed alpha
Helix 52	AF7	C	294	305	Right-handed alpha
Helix 53	AF8	C	316	320	Right-handed 310
Helix 54	AF9	C	382	389	Right-handed alpha
Helix 55	AG1	C	396	400	Right-handed 310
Helix 56	AG2	C	437	446	Right-handed alpha
Helix 57	AG3	C	480	490	Right-handed alpha
Helix 58	AG4	C	493	497	Right-handed 310
Helix 59	AG5	D	3	11	Right-handed alpha
Helix 60	AG6	D	15	21	Right-handed alpha
Helix 61	AG7	D	21	27	Right-handed alpha
Helix 62	AG8	D	46	62	Right-handed alpha
Helix 63	AG9	D	78	91	Right-handed alpha
Helix 64	AH1	D	103	115	Right-handed alpha
Helix 65	AH2	D	185	197	Right-handed alpha
Helix 66	AH3	D	215	227	Right-handed alpha
Helix 67	AH4	D	236	241	Right-handed 310
Helix 68	AH5	D	242	254	Right-handed alpha
Helix 69	AH6	D	261	264	Right-handed 310
Helix 70	AH7	D	265	272	Right-handed alpha
Helix 71	AH8	D	272	278	Right-handed alpha
Helix 72	AH9	D	294	305	Right-handed alpha
Helix 73	AI1	D	316	320	Right-handed 310
Helix 74	AI2	D	382	389	Right-handed alpha
Helix 75	AI3	D	396	400	Right-handed 310
Helix 76	AI4	D	437	446	Right-handed alpha
Helix 77	AI5	D	480	490	Right-handed alpha
Helix 78	AI6	D	493	497	Right-handed 310

There are 32 sheets in PDB entry 5JJQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	37	first strand
Strand 2	A	40	45	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	98	first strand
Strand 2	A	71	74	parallel
Strand 3	A	118	122	parallel
Strand 4	A	135	140	parallel
Strand 5	A	143	148	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	170	first strand
Strand 2	A	180	184	anti-parallel
Strand 3	A	378	379	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	234	first strand
Strand 2	A	206	209	parallel
Strand 3	A	257	259	parallel
Strand 4	A	285	288	parallel
Strand 5	A	309	314	parallel
Strand 6	A	323	326	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	366	371	anti-parallel
Strand 3	A	402	412	anti-parallel
Strand 4	A	390	392	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	366	371	anti-parallel
Strand 3	A	402	412	anti-parallel
Strand 4	A	418	423	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	430	first strand
Strand 2	A	433	436	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	457	first strand
Strand 2	A	467	473	anti-parallel
Strand 3	A	500	504	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	44	45	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	98	first strand
Strand 2	B	71	74	parallel
Strand 3	B	118	122	parallel
Strand 4	B	135	140	parallel
Strand 5	B	143	148	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	169	first strand
Strand 2	B	181	184	anti-parallel
Strand 3	B	378	379	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	206	209	parallel
Strand 3	B	257	259	parallel
Strand 4	B	285	288	parallel
Strand 5	B	309	314	parallel
Strand 6	B	323	326	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	352	first strand
Strand 2	B	366	371	anti-parallel
Strand 3	B	402	412	anti-parallel
Strand 4	B	390	392	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	352	first strand
Strand 2	B	366	371	anti-parallel
Strand 3	B	402	412	anti-parallel
Strand 4	B	418	423	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	430	first strand
Strand 2	B	433	436	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	458	first strand
Strand 2	B	466	473	anti-parallel
Strand 3	B	500	504	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	37	first strand
Strand 2	C	40	45	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	71	74	parallel
Strand 3	C	118	122	parallel
Strand 4	C	135	140	parallel
Strand 5	C	143	148	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	169	first strand
Strand 2	C	181	184	anti-parallel
Strand 3	C	378	379	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	234	first strand
Strand 2	C	206	209	parallel
Strand 3	C	257	259	parallel
Strand 4	C	285	288	parallel
Strand 5	C	309	314	parallel
Strand 6	C	323	326	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	352	first strand
Strand 2	C	366	371	anti-parallel
Strand 3	C	402	412	anti-parallel
Strand 4	C	390	392	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	352	first strand
Strand 2	C	366	371	anti-parallel
Strand 3	C	402	412	anti-parallel
Strand 4	C	418	423	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	430	first strand
Strand 2	C	433	436	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	450	457	first strand
Strand 2	C	467	473	anti-parallel
Strand 3	C	500	504	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	34	first strand
Strand 2	D	43	45	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	98	first strand
Strand 2	D	71	74	parallel
Strand 3	D	118	122	parallel
Strand 4	D	135	140	parallel
Strand 5	D	143	148	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	170	first strand
Strand 2	D	180	184	anti-parallel
Strand 3	D	378	379	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	234	first strand
Strand 2	D	206	209	parallel
Strand 3	D	257	259	parallel
Strand 4	D	285	288	parallel
Strand 5	D	309	314	parallel
Strand 6	D	323	326	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	352	first strand
Strand 2	D	366	371	anti-parallel
Strand 3	D	402	412	anti-parallel
Strand 4	D	390	392	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	352	first strand
Strand 2	D	366	371	anti-parallel
Strand 3	D	402	412	anti-parallel
Strand 4	D	418	423	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	427	430	first strand
Strand 2	D	433	436	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	450	456	first strand
Strand 2	D	468	473	anti-parallel
Strand 3	D	500	504	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JJQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JJQ