Analysis of interatomic Contacts of Structural Units in PDB entry:
5JJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JJU entry

There are 3 chains in PDB entry 5JJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 18PRO 342
B
 GLY 18PRO 342
C
 A 1003 A 1004
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 5JJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 33Right-handed alpha
Helix 2
AA2
A
45 62Right-handed alpha
Helix 3
AA3
A
77 83Right-handed 310
Helix 4
AA4
A
85 89Right-handed 310
Helix 5
AA5
A
91 95Right-handed 310
Helix 6
AA6
A
109 120Right-handed 310
Helix 7
AA7
A
150 163Right-handed alpha
Helix 8
AA8
A
167 182Right-handed alpha
Helix 9
AA9
A
189 203Right-handed alpha
Helix 10
AB1
A
205 215Right-handed alpha
Helix 11
AB2
A
220 231Right-handed alpha
Helix 12
AB3
A
237 242Right-handed alpha
Helix 13
AB4
A
250 257Right-handed alpha
Helix 14
AB5
A
258 262Right-handed 310
Helix 15
AB6
A
264 270Right-handed alpha
Helix 16
AB7
A
300 306Right-handed alpha
Helix 17
AB8
A
323 337Right-handed alpha
Helix 18
AB9
B
22 33Right-handed alpha
Helix 19
AC1
B
45 62Right-handed alpha
Helix 20
AC2
B
77 83Right-handed 310
Helix 21
AC3
B
85 89Right-handed 310
Helix 22
AC4
B
109 122Right-handed 310
Helix 23
AC5
B
150 163Right-handed alpha
Helix 24
AC6
B
167 182Right-handed alpha
Helix 25
AC7
B
189 203Right-handed alpha
Helix 26
AC8
B
205 215Right-handed alpha
Helix 27
AC9
B
220 230Right-handed alpha
Helix 28
AD1
B
237 242Right-handed alpha
Helix 29
AD2
B
250 257Right-handed alpha
Helix 30
AD3
B
258 264Right-handed alpha
Helix 31
AD4
B
264 270Right-handed alpha
Helix 32
AD5
B
300 307Right-handed alpha
Helix 33
AD6
B
323 337Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5JJU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
35 40parallel
Strand 3
A
101 105parallel
Strand 4
A
126 130parallel
Strand 5
A
141 144parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
244 249anti-parallel
Strand 3
A
277 285parallel
Strand 4
A
288 295anti-parallel
Strand 5
A
315 321anti-parallel
Strand 6
A
310 312anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 69first strand
Strand 2
B
35 39parallel
Strand 3
B
101 105parallel
Strand 4
B
126 130parallel
Strand 5
B
141 144parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 235first strand
Strand 2
B
244 249anti-parallel
Strand 3
B
277 285parallel
Strand 4
B
288 295anti-parallel
Strand 5
B
315 321anti-parallel
Strand 6
B
310 311anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il