Analysis of interatomic Contacts of Structural Units in PDB entry:
5JJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JJV entry

There are 6 chains in PDB entry 5JJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 361
B
 SER 0GLU 361
C
 T 1 C 13
D
 T 14 A 30
E
 T 1 C 13
F
 T 14 A 30
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5JJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 30Right-handed alpha
Helix 2
AA2
A
37 48Right-handed alpha
Helix 3
AA3
A
53 68Right-handed alpha
Helix 4
AA4
A
69 71Right-handed 310
Helix 5
AA5
A
72 89Right-handed alpha
Helix 6
AA6
A
100 104Right-handed 310
Helix 7
AA7
A
105 118Right-handed alpha
Helix 8
AA8
A
121 143Right-handed alpha
Helix 9
AA9
A
176 190Right-handed alpha
Helix 10
AB1
A
196 211Right-handed alpha
Helix 11
AB2
A
213 219Right-handed alpha
Helix 12
AB3
A
221 223Right-handed 310
Helix 13
AB4
A
253 265Right-handed alpha
Helix 14
AB5
A
284 299Right-handed alpha
Helix 15
AB6
A
307 324Right-handed alpha
Helix 16
AB7
A
325 334Right-handed alpha
Helix 17
AB8
A
337 342Right-handed alpha
Helix 18
AB9
A
343 347Right-handed 310
Helix 19
AC1
A
348 357Right-handed alpha
Helix 20
AC2
A
358 361Right-handed 310
Helix 21
AC3
B
10 30Right-handed alpha
Helix 22
AC4
B
37 50Right-handed alpha
Helix 23
AC5
B
53 68Right-handed alpha
Helix 24
AC6
B
69 71Right-handed 310
Helix 25
AC7
B
72 93Right-handed alpha
Helix 26
AC8
B
95 104Right-handed 310
Helix 27
AC9
B
105 117Right-handed alpha
Helix 28
AD1
B
121 143Right-handed alpha
Helix 29
AD2
B
176 190Right-handed alpha
Helix 30
AD3
B
196 211Right-handed alpha
Helix 31
AD4
B
213 219Right-handed alpha
Helix 32
AD5
B
221 223Right-handed 310
Helix 33
AD6
B
239 241Right-handed 310
Helix 34
AD7
B
253 265Right-handed alpha
Helix 35
AD8
B
284 299Right-handed alpha
Helix 36
AD9
B
307 324Right-handed alpha
Helix 37
AE1
B
325 334Right-handed alpha
Helix 38
AE2
B
337 343Right-handed alpha
Helix 39
AE3
B
348 351Right-handed 310
Helix 40
AE4
B
352 357Right-handed alpha
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There are 2 sheets in PDB entry 5JJV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 228first strand
Strand 2
A
231 237anti-parallel
Strand 3
A
243 249anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 228first strand
Strand 2
B
231 237anti-parallel
Strand 3
B
243 249anti-parallel
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